Gene Information

Name : UMN179_00288 (UMN179_00288)
Accession : YP_004419222.1
Strain : Gallibacterium anatis UMN179
Genome accession: NC_015460
Putative virulence/resistance : Virulence
Product : zinc/manganese ABC transporter periplasmic protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 292064 - 292945 bp
Length : 882 bp
Strand : -
Note : -

DNA sequence : 
GTGTTAAGAAAAGCATTATTATTGATTTTTTTGTTGATTGCACCACTAGCAATGGCGAAACCGTTTAAAGTGATTACTTC
ATTTACTATTATTCGGGATATTGCACAAAATGTTGCCGGTGACAGTGCTATTGTGGAGTCGATTACTAAGCCGGGTGCAG
ATATTCATAATTATCAGCCGACACCAAAAGATATTGTTAAAGCACAGGATGCGCAGTTGATTTTATGGAACGGTTTGCAT
TTGGAACAGTGGTTTGAGCGTTTTTTCAATAATTTGCCTAATGTGCCTAGTGTAATTGTTAGTGAAGGGGTTGAACCTTT
GTCCATTTACGAAGGGCCTTATCAAGGTTTTGCCAATCCGCACGCTTGGATGTCGCCGAAAAATGCAATGATTTATGTGG
AGAATATTCGTCAAGCATTGGTGAAATATGATCCGCAACATCAAGATAATTACAACCATAATGCAGCGGTTTATCGACAA
AAACTGATTGAATTAGATAAGCAATTTCAACGGCAGTTGGCTTTTATTCCAGCAGAAAAGCGTTGGTTAGTCACCAGTGA
AGGCGCATTTAGTTATTTAGCTAAAGACTATGGCTTTTCTGAATTATATTTGTGGCCGATTAATGCCGAGCAACAAGGTT
CACCGCAGCAAATTCGTCACGTTATCGAACAGATGCGTAAACATCGATTGCCGGTGATTTTTAGTGAAAGCACCATTTCC
GATAAGCCGGCAAAACAGATTGCAAAAGAGACCGGCGCCAATTACGGTGGGGTGCTTTATGTGGACTCACTTTCGCAGCC
GGATGGTGCGGTGCCGACGTTTCTTGATTTATTGACAGTCACAGTTAACACAATAACAAAAGGATTTAAACAGAATGACT
GA

Protein sequence : 
MLRKALLLIFLLIAPLAMAKPFKVITSFTIIRDIAQNVAGDSAIVESITKPGADIHNYQPTPKDIVKAQDAQLILWNGLH
LEQWFERFFNNLPNVPSVIVSEGVEPLSIYEGPYQGFANPHAWMSPKNAMIYVENIRQALVKYDPQHQDNYNHNAAVYRQ
KLIELDKQFQRQLAFIPAEKRWLVTSEGAFSYLAKDYGFSELYLWPINAEQQGSPQQIRHVIEQMRKHRLPVIFSESTIS
DKPAKQIAKETGANYGGVLYVDSLSQPDGAVPTFLDLLTVTVNTITKGFKQND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-88 64
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-88 64
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-88 64
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-88 64
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 8e-89 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMN179_00288 YP_004419222.1 zinc/manganese ABC transporter periplasmic protein BAC0439 Protein 2e-96 69
UMN179_00288 YP_004419222.1 zinc/manganese ABC transporter periplasmic protein BAC0349 Protein 5e-89 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMN179_00288 YP_004419222.1 zinc/manganese ABC transporter periplasmic protein VFG0525 Protein 5e-89 64