Gene Information

Name : UMN179_00285 (UMN179_00285)
Accession : YP_004419219.1
Strain : Gallibacterium anatis UMN179
Genome accession: NC_015460
Putative virulence/resistance : Virulence
Product : zinc/manganese ABC transporter membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 289491 - 290330 bp
Length : 840 bp
Strand : -
Note : -

DNA sequence :
ATGTTGGCTTGGTTAATTGAATCAATTTCATATCCCTTTATGCAGGTTTCATTGATAACTGCTTTAATGATTGCGACAAT
CTGTGCAGTATTGTCTTGCTATTTGGTATTAAAAGGTTGGGCATTGATGGGCGATGCCATTTCACACGCCATTTTGCCCG
GCATTGTACTGGCTTTTATCTTTAATTTACCGTTGACGTTAGGTGCTTTTTTAGCCGGAATCGGTTGTGCTAGCAGCATT
GGTTTTTTGAAGAATCACGCCCGTTTGAAAGAAGACACCATTATGGGCATTGTGTTTTCCGGAATGTTTGCTTTCGGCTT
GGTTTTATTCGGTCAGGTGCAGACCAATCAACATCTGACTCATATTTTATTCGGTGATATTTTGGGCATTGATCGCCAAC
AGATGTGGCAAATGTTGGCAGTGGGTGCGGCGATTTTAGTACTGATTTATAGTAAATGGCGTGATTTGTTGCTTTATTGT
TTTGATCCTGTGCAGGCAAAAGTGATGGGATTAAATGCTACTTTCTTACATTATGGTTTGTTGTCGTTATTATCTTTGTC
AATCGTGCTGGCAATGCAGATCGTTGGCGTGATTTTGGTAGTAGCAATGCTAATTTCACCGGGAATCACTGCATATCTGT
TAAGTAAACGTTTTTCTACAATGTTATTGATTGCGATAGGAAGCGCATTATTATCCAATATTGGCGGAATTATCATCAGT
TATCATCTTGATAGTGCAACTGGCGCAACGATTGTATTGACCCAAGCTGTGCTTTTTATTTTTGCAGTGATGATAAATAA
ATGGAAAAACCGCCAATTGAGCAAAGTAGATGTTAATTAA

Protein sequence :
MLAWLIESISYPFMQVSLITALMIATICAVLSCYLVLKGWALMGDAISHAILPGIVLAFIFNLPLTLGAFLAGIGCASSI
GFLKNHARLKEDTIMGIVFSGMFAFGLVLFGQVQTNQHLTHILFGDILGIDRQQMWQMLAVGAAILVLIYSKWRDLLLYC
FDPVQAKVMGLNATFLHYGLLSLLSLSIVLAMQIVGVILVVAMLISPGITAYLLSKRFSTMLLIAIGSALLSNIGGIIIS
YHLDSATGATIVLTQAVLFIFAVMINKWKNRQLSKVDVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-58 48
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-58 48
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-58 48
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-59 48
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-59 48
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-44 42
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 6e-44 42
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-44 42
sitC NP_461784.1 permease Virulence SPI-1 Protein 9e-44 42
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-44 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMN179_00285 YP_004419219.1 zinc/manganese ABC transporter membrane protein BAC0442 Protein 2e-69 53
UMN179_00285 YP_004419219.1 zinc/manganese ABC transporter membrane protein BAC0352 Protein 4e-59 48
UMN179_00285 YP_004419219.1 zinc/manganese ABC transporter membrane protein BAC0351 Protein 4e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMN179_00285 YP_004419219.1 zinc/manganese ABC transporter membrane protein VFG0528 Protein 4e-59 48
UMN179_00285 YP_004419219.1 zinc/manganese ABC transporter membrane protein VFG0527 Protein 4e-44 42