Gene Information

Name : UMN179_00152 (UMN179_00152)
Accession : YP_004419086.1
Strain : Gallibacterium anatis UMN179
Genome accession: NC_015460
Putative virulence/resistance : Unknown
Product : integrase core domain protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 169195 - 169917 bp
Length : 723 bp
Strand : -
Note : -

DNA sequence : 
TTGGCGGTAGAGATAAAGGCATTATTTGATGAAAGTCGTGGTTCAGCCGGAAAGCGGACGCTAAAAGCGAGATTAAAAAG
TAAGGGTATTGAGGTAGGATTAGCCTTGATTCGACAGCTGATGAAACAGCAAGGATTAGTCAGTAAACAGCCGCAAAAAC
GTTGGCGGACAGGCACGTCAGAGCAAGTGTCCACGTTGTTTAATAATGTGTTAAATCGGCAATTTAGTCCATGCGCTGAC
ACAACGGTGTTATGCGGTGATACCACCTATTTGAAGGTGCAGGGGGAATGGCATTATTTAGCAATCGTGATGAACCTGGC
GCAGCGTCAAGTGGTTGGTTGGCGATTGCAGAAACAGCACGATTCAACGTTAGTGGTGGAGGCATTAAATCATGCGATGC
TGACAACGGAAAGAACGAGGAAGATGTTGTTTCACTCAGACCAAGGCAGTATTTATGGGAGTGCGTCATTTATACGATGT
GTGAAACAGCATGGTTTGATACAAAGTATGAGTCGCCGAGGAAATTGTTGGGATAATGCACCGATGGAACGCTGGTTTAG
AAGTTTTAAATATGAATGGATGTTAAAGGGCGGTTATTCTTCATTAGATGAAGCCAAGGAAGATATTAAACAGTATGTGT
TTTACTATAACAGGGTGAGACCGCATAGCTATAATCAAGGATTACCGCCAGTTTTAGCGAAAAAACCTATTAGGGACTGC
TGA

Protein sequence : 
MAVEIKALFDESRGSAGKRTLKARLKSKGIEVGLALIRQLMKQQGLVSKQPQKRWRTGTSEQVSTLFNNVLNRQFSPCAD
TTVLCGDTTYLKVQGEWHYLAIVMNLAQRQVVGWRLQKQHDSTLVVEALNHAMLTTERTRKMLFHSDQGSIYGSASFIRC
VKQHGLIQSMSRRGNCWDNAPMERWFRSFKYEWMLKGGYSSLDEAKEDIKQYVFYYNRVRPHSYNQGLPPVLAKKPIRDC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 9e-40 45
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 2e-34 45
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 2e-34 45
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 5e-33 45
unnamed AAC31485.1 L0006 Not tested LEE Protein 4e-33 45
unnamed CAI43898.1 putative transposase Not tested LEE Protein 4e-35 44
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 4e-35 44
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 2e-41 44
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-33 43
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 2e-33 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UMN179_00152 YP_004419086.1 integrase core domain protein VFG1484 Protein 1e-34 45
UMN179_00152 YP_004419086.1 integrase core domain protein VFG0785 Protein 9e-34 43