Gene Information

Name : PT7_2220 (PT7_2220)
Accession : YP_004417384.1
Strain : Pusillimonas sp. T7-7
Genome accession: NC_015458
Putative virulence/resistance : Unknown
Product : transposase TnpC protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 2375968 - 2377368 bp
Length : 1401 bp
Strand : -
Note : -

DNA sequence :
TTGCTCGATAAACTACGGCGCGCCTTGTTCGGCCAGAAGTCTGAGAAGCTTGCGGGCCAAATCGATCAATTGCAGCTCGA
ACTCGAAGAGCTGCACATTAACCAGGGCGAACGCGCGCAAAGCATTGAATCGGCCCAAGCGCCTGCCTCGCGCCCCGCGC
CGCAGCGTCGGCCATTACCAGAGCACTTACCGTGCGAGGTGCATGAACATCTTCCCAAGGAGTCTGCCTGCCCCGACTGC
GGCGGCGCGTGGACGCGCTTGGGCGAGGACGTGAGCAATGTGCTGGAACACGTGCCGGCCAGCTTTAGAATCGTTCGCCA
TGTGCGCCCACGCCTGGCGTGCAGTTGTTGCGAGCGGATGGCGCAAGCGCCCGCGCCCAGCCGCCCCATTGCCCGCAGCT
TCGCGGGGCCAGGGCTATTGAGCCATGTCATGGTCAGCAAATATCTGGACCATCAACCGCTGTACCGCCAGTGCCAGATC
TACGAGCGCGAGAACGTGAGTTTAAGTGAGAGCACCGTCGGTGACTGGGTCGGTGGGGTGCACCAATTGCTGCGCCCTTT
ACTGGAGGCGCTACGCCGCCACGTCTTTAGCGCCGACAAACTGCATACGGACGATACCCCGATCAACGTACTTGCGCCGG
GCACTGGCAAGACACGCCAGGCGCGCCTGTGGGTCTATGCTCGTGATGATCGGCCCAGTGGCGATACGACAGCGCCGGCC
ATGTGGATACGTTACTCGCCCGATCGGCGCGGCATCCACCCGCAAACGCACCTGAAGGATTACATCGGTATCCTACAGGC
CGATGCGTTTGCCGGGTACGACAAGATTTATGAATCAGGCCGTGTGCTAGAGGCCGGATGCTGGGCGCACGCCCGACGTA
AGTTCTACGACATCCACGTTAAAAGTGCCACGCCCATTACGACGCACGTGCTTGATCGGATCGCCGCCCTCTACAAGATT
GAGTCCAGCATCCGCGGTAGCCCAGCGGACGTACGGCGAAGGGTTCGCCAGGAACACGCCAAGCCCCTCGCCATCGCGCT
GCATGCCTGGCTGCGCGAACAGTTGACGACCATCTCGCGCAAATCGAATACGGCCGACGCCATCGCTTATGCCATGAATC
AGTGGCAGGCACTGGTGCGTTATCTGGACGATGGGCGCATTGAGATCGACAACAATACCGCCGAGCGAGCGTTGCGCGGG
GTAGCCCTGGGCAGGAAAAACTACCTGTTTCTGGGGTCCGACGCGGGCGGTGAACGCGCGGCCACGATGTACAGCCTACT
TGGCACAGCCAAATTGAACGATATCAATCCCCAAGCGTACCTGCGCCACGTCTTGAGCGTGATCGCCGACCATCCGGTGA
ACCGGGTTGACGAGCTGCTGCCCTGGAACGTCGCGCTTTAA

Protein sequence :
MLDKLRRALFGQKSEKLAGQIDQLQLELEELHINQGERAQSIESAQAPASRPAPQRRPLPEHLPCEVHEHLPKESACPDC
GGAWTRLGEDVSNVLEHVPASFRIVRHVRPRLACSCCERMAQAPAPSRPIARSFAGPGLLSHVMVSKYLDHQPLYRQCQI
YERENVSLSESTVGDWVGGVHQLLRPLLEALRRHVFSADKLHTDDTPINVLAPGTGKTRQARLWVYARDDRPSGDTTAPA
MWIRYSPDRRGIHPQTHLKDYIGILQADAFAGYDKIYESGRVLEAGCWAHARRKFYDIHVKSATPITTHVLDRIAALYKI
ESSIRGSPADVRRRVRQEHAKPLAIALHAWLREQLTTISRKSNTADAIAYAMNQWQALVRYLDDGRIEIDNNTAERALRG
VALGRKNYLFLGSDAGGERAATMYSLLGTAKLNDINPQAYLRHVLSVIADHPVNRVDELLPWNVAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-106 58
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 7e-121 56
tnp AEA34686.1 transposase Not tested Not named Protein 1e-119 54
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 6e-119 54
unnamed AAL57570.1 unknown Not tested LEE Protein 2e-119 54
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 5e-116 53
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 7e-119 53
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 7e-119 53
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 4e-119 53
unnamed AAC31494.1 L0015 Not tested LEE Protein 5e-119 53
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 5e-119 53
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 3e-119 53
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 4e-118 53
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 4e-118 53
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 3e-90 52
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 6e-110 51
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 3e-108 49
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 8e-110 48
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 8e-110 48
unnamed AAL08460.1 unknown Not tested SRL Protein 3e-81 48
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 5e-95 47
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 4e-95 47
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 2e-71 44
EXB16 ABD94703.1 ISPpu14 transposase Orf3 Not tested ExoU island B Protein 1e-66 41
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 1e-75 41
tnpC AEZ06051.1 transposase Not tested Tn6167 Protein 7e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PT7_2220 YP_004417384.1 transposase TnpC protein VFG1700 Protein 4e-107 58
PT7_2220 YP_004417384.1 transposase TnpC protein VFG0793 Protein 3e-119 53
PT7_2220 YP_004417384.1 transposase TnpC protein VFG1513 Protein 2e-90 52
PT7_2220 YP_004417384.1 transposase TnpC protein VFG1051 Protein 2e-81 48
PT7_2220 YP_004417384.1 transposase TnpC protein VFG1736 Protein 2e-82 45