Gene Information

Name : VAB18032_24620 (VAB18032_24620)
Accession : YP_004406622.1
Strain : Verrucosispora maris AB-18-032
Genome accession: NC_015434
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4462210 - 4462983 bp
Length : 774 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence :
ATGCCCGCCATCGTTGGAGGATCCGCCGAGACAGCGGTCCGCGTCGGACAACTCACCCGCGTCTACGGCACCGGCCCACA
GGCGGTCACCGCGCTCGCCGGGGTGGACGTGGAATTTCACCGCGGCACCTTCACCGCGGTGATGGGGCCGTCGGGTTCCG
GCAAGAGCACCCTGCTGCAGACCGCGGCCGGCCTGGACCGGCCCACCTCCGGTCAGGTGTGGATCGGTGACCAGGAGTTG
TCGCGGCTGTCGGAGACGAAGCTGACCAAGCTGCGGCGCAGCCGGATCGGCTTCGTCTTCCAGGCCTTCAACCTGATCGG
GGCGTTGACCGTCGAGGAGAACATCCACCTGCCGTTGCGACTGTCCGGCGCGCGTCCCGACCCCGACTGGCTCGGGCAGG
TGATCGACCGGGTCGGGCTCACCGATCGGCTGCACCACCGGCCGGCCGAGCTGTCCGGCGGGCAGCAGCAGCGGGTGGCG
ATCGCCCGGGCCCTGGCGATGCGCCCCGAGGTGATCTTCTGTGACGAGCCGACCGGTGCGCTGGACACGCAGACCGCCGC
CGAGGTGCTGGCCCTGCTGCGGTCGGTGGTCGACGAGACGCGACAGACGGTGATCATGGTGACCCACGACCCGGTGGCCG
CCTCGTACGCCGACCGGGTGATGGTCCTCGCGGACGGCCGGATCGTGCAGGACCTGCCGCAGCCGGGTGCGGAGCGGATC
GCCGAGCAGTTGGCGCTGCTCGGGCGTCGTCAGCTCGTCGCGCAGGGGAGCTGA

Protein sequence :
MPAIVGGSAETAVRVGQLTRVYGTGPQAVTALAGVDVEFHRGTFTAVMGPSGSGKSTLLQTAAGLDRPTSGQVWIGDQEL
SRLSETKLTKLRRSRIGFVFQAFNLIGALTVEENIHLPLRLSGARPDPDWLGQVIDRVGLTDRLHHRPAELSGGQQQRVA
IARALAMRPEVIFCDEPTGALDTQTAAEVLALLRSVVDETRQTVIMVTHDPVAASYADRVMVLADGRIVQDLPQPGAERI
AEQLALLGRRQLVAQGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-38 47
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-40 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-40 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-40 45
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_24620 YP_004406622.1 ABC transporter NC_012469.1.7686878. Protein 5e-45 47
VAB18032_24620 YP_004406622.1 ABC transporter CP001581.1.gene798.p Protein 2e-45 47
VAB18032_24620 YP_004406622.1 ABC transporter CP001581.1.gene598.p Protein 6e-49 46
VAB18032_24620 YP_004406622.1 ABC transporter NC_008702.1.4606598. Protein 7e-40 45
VAB18032_24620 YP_004406622.1 ABC transporter NC_012469.1.7685735. Protein 6e-37 42