Gene Information

Name : VAB18032_23600 (VAB18032_23600)
Accession : YP_004406418.1
Strain : Verrucosispora maris AB-18-032
Genome accession: NC_015434
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4242440 - 4243240 bp
Length : 801 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
GTGTCCCTCGCACCGCCCGTCCACGTCACCGCCGGCGTCGCCGTCACCGCCCACGGCCTGCGCAAGCAGTACGGCACCGG
GGAGGCCGCCGTCGTCGCCCTCGACGACGTCGACGTCACCTTCGCCGCCGGCCGGTTCACCGCCATCATGGGCCCGTCCG
GCTCCGGCAAGTCGACCCTGATGCACTGCCTGGCGGGCCTGGACCGGCCCACCGCCGGCACCGTACGCATCGGCGACGCG
GAGTTGGGCCGCCTCGACGACCGGCGGCTGACCCTGCTGCGCCGGGACCGGGTCGGTTTCGTGTTCCAGCGCTTCAACCT
GCTGCCCGCGCTCAGCACCGAGGAGAACATCCTGCTGCCGTTGGCGATCGCCGGCCGGCGACCGGAACCCGGCTGGTTCC
GCCAGGTGGTCGCCGCCGTCGGGCTGGCCGACCGGCTGCGGCACCGACCGGCCGAGTTGTCCGGTGGCCAGCAGCAGCGG
GTCGCGGTGGCCCGCGCGCTGGTCACCAAGCCGTGGGTGGTCTTCGCCGACGAGCCCACCGGCAACCTCGACTCCCGGGC
CGGCAACGAGGTGCTGCGGCTGCTGCGCGAGGCGGTGGACACCCTGGGACAGACGGTGGTGATGGTCACCCACGATCCGA
CCGCCGCCGCCCACGCCGACCGGGTGGTGTTCCTCGCCGACGGCCGGCTGGTCCGCGACCTGGCCGCACCGACCGCCGAG
CGGGTCCTCGACGTGCTCGCCCACCTGGATCCCGGCGCGGACCGGGCCGGTGACGCCGTTCCGTCGCACCGGGGGCGGTG
A

Protein sequence : 
MSLAPPVHVTAGVAVTAHGLRKQYGTGEAAVVALDDVDVTFAAGRFTAIMGPSGSGKSTLMHCLAGLDRPTAGTVRIGDA
ELGRLDDRRLTLLRRDRVGFVFQRFNLLPALSTEENILLPLAIAGRRPEPGWFRQVVAAVGLADRLRHRPAELSGGQQQR
VAVARALVTKPWVVFADEPTGNLDSRAGNEVLRLLREAVDTLGQTVVMVTHDPTAAAHADRVVFLADGRLVRDLAAPTAE
RVLDVLAHLDPGADRAGDAVPSHRGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-34 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_23600 YP_004406418.1 ABC transporter NC_008702.1.4606598. Protein 1e-29 49
VAB18032_23600 YP_004406418.1 ABC transporter NC_012469.1.7686878. Protein 1e-32 47
VAB18032_23600 YP_004406418.1 ABC transporter CP001581.1.gene598.p Protein 5e-39 46
VAB18032_23600 YP_004406418.1 ABC transporter CP001581.1.gene798.p Protein 1e-36 46