Gene Information

Name : VAB18032_23345 (VAB18032_23345)
Accession : YP_004406367.1
Strain : Verrucosispora maris AB-18-032
Genome accession: NC_015434
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4190329 - 4190985 bp
Length : 657 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
GTGCGGGTGCTCCTGGTGGAAGACGATCTGCGTGTGTCGGCGGGGCTCGCCTCGGCGCTGCGACGACGGGGGCACGAGGT
GGTGCAGGCGCTCACGGCGGCCGAGGCGGCCGAGGCCGAGCCGGTCGACCTCATTCTGCTGGACATGAACCTGCCGGACC
GCGACGGTCTGGAGGTGTGTCGGCGGATCCGCCAGCACAACGAGGAGGTCGCCATCATCGCGGTGACCGCCCGCGCGGAG
GAACACGACCGGGTGGCGGGGTTGCGCGCCGGCGCCGACGACTACGTGGTGAAGCCGTTCTCGATGGTCGAGTTGCAGGC
TCGTATCGATGCGGTGATGCGGCGGACCGGCCGTGCGGTGCGGGCGACGACGGCCCTTCAGATCGGGCCGTTGCGCATCG
ACGTCGACGCCCGCCGGGTCTGGATCTACGAGCGGGAGGTCGCCCTGTCCCGCAAGGAGTTCGACCTGCTGGTGGCGTTG
GCCCGCCAGGCGGGGACGGTGGTGCCCCGGGACCGTTTGCAACTGGAGGTGTGGCAGACCACCTGGGCCACCCGGCACAA
CCTCGATGTCCACGTCGCGGCGCTGCGCGGCAAGTTGGAGAACCCCCAACTGGTGGAGACCGTGCGCGGAGTGGGATATC
GATTGCGGGTCGACTGA

Protein sequence : 
MRVLLVEDDLRVSAGLASALRRRGHEVVQALTAAEAAEAEPVDLILLDMNLPDRDGLEVCRRIRQHNEEVAIIAVTARAE
EHDRVAGLRAGADDYVVKPFSMVELQARIDAVMRRTGRAVRATTALQIGPLRIDVDARRVWIYEREVALSRKEFDLLVAL
ARQAGTVVPRDRLQLEVWQTTWATRHNLDVHVAALRGKLENPQLVETVRGVGYRLRVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-20 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_23345 YP_004406367.1 two component transcriptional regulator AE015929.1.gene1106. Protein 7e-22 42
VAB18032_23345 YP_004406367.1 two component transcriptional regulator NC_010079.5776364.p0 Protein 4e-25 41
VAB18032_23345 YP_004406367.1 two component transcriptional regulator NC_002952.2859858.p0 Protein 4e-25 41
VAB18032_23345 YP_004406367.1 two component transcriptional regulator NC_007622.3794948.p0 Protein 4e-25 41
VAB18032_23345 YP_004406367.1 two component transcriptional regulator NC_003923.1003417.p0 Protein 4e-25 41
VAB18032_23345 YP_004406367.1 two component transcriptional regulator NC_013450.8614146.p0 Protein 4e-25 41
VAB18032_23345 YP_004406367.1 two component transcriptional regulator NC_002951.3238224.p0 Protein 4e-25 41
VAB18032_23345 YP_004406367.1 two component transcriptional regulator NC_007793.3914065.p0 Protein 4e-25 41
VAB18032_23345 YP_004406367.1 two component transcriptional regulator NC_002758.1121390.p0 Protein 4e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_23345 YP_004406367.1 two component transcriptional regulator VFG1389 Protein 6e-26 42
VAB18032_23345 YP_004406367.1 two component transcriptional regulator VFG0596 Protein 1e-20 42