Gene Information

Name : VAB18032_20230 (VAB18032_20230)
Accession : YP_004405746.1
Strain : Verrucosispora maris AB-18-032
Genome accession: NC_015434
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3484054 - 3484860 bp
Length : 807 bp
Strand : -
Note : COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

DNA sequence : 
ATGCCGACCTCCCGGCTGGGTGGCAGCGGACTGCGGCTGGCCTACGAACGGCGGGTGGTCGCCGACGACCTGACCGTCGC
CGTGCCGGACCGGTCCTTCACGGTCATCATCGGCCCGAACGCCTGCGGCAAGTCCACCCTGCTGCGGGCGTTGTCCCGGC
TGCTGAAACCGGCCGTCGGGGCGGTGCTGCTCGACGGTGAGGACATCCAGCGACGGCCGGCCCGGGCGGTGGCCCGTACC
CTCGGGCTGCTGCCGCAGTCGCCGATCGCGCCGGACGGCATCGGGGTGGCCGACCTGGTGGCCCGGGGCCGCTACCCGCA
CCAGGGGCTGCTGCGCCAGTGGTCCCGCGACGACGAACGGATCGTGGCCGAGGCGATGGCCGCGACAGGTGTCGCCGACC
TGGCCGACCGGCTGGTCGACGAGCTTTCCGGCGGCCAACGGCAACGGGTCTGGTTGGCCATGGCGCTGGCCCAGCAGACC
CCGCTGCTGCTGCTCGACGAGCCGACCACCTACCTGGACATCGCCCACCAGATCGAGGTGCTCGACCTGTGCGCCCGGCT
GCACGAGGAACAGGGCCGTACCCTTGTCGCGGTGTTGCACGACCTCAACCACGCCGCCCGCTACGCCACCCACCTGATCG
CGATGCGCGACGGACGGGTGGTGGCCGCCGGTGAGCCCGGCCAGATCGTCACCGCCGAACTGGTCGAGGAGGTCTTCGGG
CTGCCCTGCCGGGTCATCGACGACCCGGAGACCGGCACCCCGCTTGTCATCCCGGCCGCCCGCATCCGCACCGGAGGCCG
GGCATGA

Protein sequence : 
MPTSRLGGSGLRLAYERRVVADDLTVAVPDRSFTVIIGPNACGKSTLLRALSRLLKPAVGAVLLDGEDIQRRPARAVART
LGLLPQSPIAPDGIGVADLVARGRYPHQGLLRQWSRDDERIVAEAMAATGVADLADRLVDELSGGQRQRVWLAMALAQQT
PLLLLDEPTTYLDIAHQIEVLDLCARLHEEQGRTLVAVLHDLNHAARYATHLIAMRDGRVVAAGEPGQIVTAELVEEVFG
LPCRVIDDPETGTPLVIPAARIRTGGRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-65 53
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-65 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-65 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-65 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-65 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-62 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-62 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-48 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-51 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-50 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-50 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-50 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-50 41
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 2e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_20230 YP_004405746.1 ABC transporter BAC0164 Protein 1e-48 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_20230 YP_004405746.1 ABC transporter VFG0925 Protein 7e-77 60
VAB18032_20230 YP_004405746.1 ABC transporter VFG1042 Protein 9e-49 46