Gene Information

Name : VAB18032_16610 (VAB18032_16610)
Accession : YP_004405026.1
Strain : Verrucosispora maris AB-18-032
Genome accession: NC_015434
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2644115 - 2644837 bp
Length : 723 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGAGCAGCGAGCCGCTGCTGCGCGTACGCGGCGTGCATCGGCGTTTCCGCACCGGGCCGACCGTCGTGCACGCGCTGCG
TGGTGTGTCGTTCGACGTGTCCGCCGGTTGCATGGTGGCGCTCGTCGGCCGGTCCGGCTCGGGCAAGACCACCCTGCTCA
ACGTCATCGGCGGTCTGGATCGCCCGGACGCCGGCACCGTGCACGTCGACGGCGCGGACGTCACCGCGCTCGACGAGGAC
GGCCTGTCCCGGCTGCGGCGCGAGAAGGTGTCGTACGTCTTCCAGAGCTTCGGGTTGATCCCGGTGCTGTCGGCCGCGGA
GAACGTCGCCGCCCCGCTGCGGCTGGCCCGCGTCGCTCCGGCCGAGCGCGAGCGGCGGGTCGAGTTGCTGCTGGAGCTGG
TCGGTCTGGCCGACCATGCCCGGCAGCGGCCGGCCGAGCTGTCCGGCGGGCAGCAGCAGCGGGTGGCGATCGCCCGCGCG
CTGGCCGCCTCGCCCCGGCTCCTGATCGCCGACGAGCCCACCGGGCAACTGGACGCGGAGACAGGCCTGTCGGTGATGGC
CCTGCTGCGTGGGGTGGTCGAGTCCGAAGGTGTCACCGCACTGGTGTCCACCCACGATCCGGTGATGATGGCGTTGGCCG
ACCGGGTGATCCGGATCCACGACGGGCACCTCCACGACGAGGCAGCCGGGCAACCGGACGAGCCTGTGCCGGACGCGGGG
TGA

Protein sequence : 
MSSEPLLRVRGVHRRFRTGPTVVHALRGVSFDVSAGCMVALVGRSGSGKTTLLNVIGGLDRPDAGTVHVDGADVTALDED
GLSRLRREKVSYVFQSFGLIPVLSAAENVAAPLRLARVAPAERERRVELLLELVGLADHARQRPAELSGGQQQRVAIARA
LAASPRLLIADEPTGQLDAETGLSVMALLRGVVESEGVTALVSTHDPVMMALADRVIRIHDGHLHDEAAGQPDEPVPDAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-29 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 6e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_16610 YP_004405026.1 ABC transporter NC_008702.1.4606598. Protein 5e-32 53
VAB18032_16610 YP_004405026.1 ABC transporter CP001581.1.gene798.p Protein 2e-35 41
VAB18032_16610 YP_004405026.1 ABC transporter NC_012469.1.7686878. Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_16610 YP_004405026.1 ABC transporter VFG2059 Protein 7e-11 42