Gene Information

Name : VAB18032_11920 (VAB18032_11920)
Accession : YP_004404098.1
Strain : Verrucosispora maris AB-18-032
Genome accession: NC_015434
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1600379 - 1601194 bp
Length : 816 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
GTGAGTTCGGGCAACGAACCGACACCTGCCCTTTCCAATCGCAGCGGTCAGCCGGGCGCGGGGGGCCAGGGCAGCGCCCC
GACCGCGACGACGACCGACGCGGTGCTGGAACTGCGTGACGTACACCGCACCCACGGCAACGGCCCCGCCGCCGTCCACG
CCCTGCGCGGAGTGAGCCTGGTCGTACGCCCCGGCGAACTGGTCGCCGTGATGGGTCCCTCCGGCTCCGGCAAGTCGACC
TTGCTCACCCTGGCCGGTGGCCTGGACAGCCCGACCTCCGGTGAGGTGCACGTCGAGGGCCAGCCGCTGCACGCCCTGGA
CCGCAGCGGCCTGGCCCGGTTGCGGCGACGCCGGATCGGCTACATCTTCCAGAACCTGAACCTCATCGGCAGCCTGACCG
CGGTGGAGAACGTCGCGCTGCCCCTGGAACTCGACGGGACGGGTGTGCGCCGGGCCCGGCGGCTCGCGCTTGACGCGCTG
ACCGAGGTGGGCATGTCGGAGCTGGGCGATCGGGTTCCGGACCAACTCTCCGGCGGTCAGCAGCAGCGGGTGGCGATCGC
CCGGGCCCTGGTCGGCGAGCGTCGCCTCGTGCTGGCCGACGAGCCGACCGGAGCACTGGACTCGCAGACCGGGGAGGCCG
TCCTGCGGCTGCTGCGCCGCCGGGTCGACGCGGGCGCCGCCGGTGTGCTGGTCACCCACGAGGCCCGACACGCCGGCTGG
GCGGACCGGGTGGTGTTCCTGCGCGACGGCCTGGCCGTCGACTCGACCGCACCGCTGGTCGGCATCGAATCCCTGCTCTC
CGGCAGCGGCCGGTGA

Protein sequence : 
MSSGNEPTPALSNRSGQPGAGGQGSAPTATTTDAVLELRDVHRTHGNGPAAVHALRGVSLVVRPGELVAVMGPSGSGKST
LLTLAGGLDSPTSGEVHVEGQPLHALDRSGLARLRRRRIGYIFQNLNLIGSLTAVENVALPLELDGTGVRRARRLALDAL
TEVGMSELGDRVPDQLSGGQQQRVAIARALVGERRLVLADEPTGALDSQTGEAVLRLLRRRVDAGAAGVLVTHEARHAGW
ADRVVFLRDGLAVDSTAPLVGIESLLSGSGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 48
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-28 48
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VAB18032_11920 YP_004404098.1 ABC transporter NC_008702.1.4606598. Protein 6e-27 47
VAB18032_11920 YP_004404098.1 ABC transporter NC_012469.1.7686878. Protein 1e-33 44