Gene Information

Name : Lbuc_1195 (Lbuc_1195)
Accession : YP_004398513.1
Strain : Lactobacillus buchneri NRRL B-30929
Genome accession: NC_015428
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1259554 - 1260240 bp
Length : 687 bp
Strand : -
Note : KEGG: lbr:LVIS_1018 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction resp

DNA sequence : 
ATGAGTCGAATTTTGATTATTGAAGACGAAAAGAACTTAGCACGTTTCGTCGAACTGGAGTTAAAGCACGAAGGCTACGA
TACCCAAGTTGAGCTTAACGGCAGAACTGGTTTGCAGGCTGCATTGGATGAGAACTTCGATGTCATTTTGCTTGATTTGA
TGTTGCCTGAATTGAACGGAATGGAAGTTGCCCGCCGCCTACGTGAAAAGAAGAACACACCAATTATCATGATGACCGCG
CGGGACTCTGTTATTGACCGAGTTTCGGGCTTTGATCATGGCGCTGATGATTACATTGTCAAACCCTTTGCGATTGAGGA
ACTCTTAGCTCGAATCCGGGCTTTGCTTCGCCGAATTCAAATCGAAAATGATCAACAAAAGAACAACAAGAAATCAGTTA
CGTTCAAAGACTTAACCATTGAAAAGGAAAGTCGAATTGTTCGTCGTGGCGATGAAGTGATTAACCTCACAAAGCGTGAA
TATGAATTGTTGCTGACTTTGATGGAAAACGTTGACGTTGTCCTGGCTCGAGATGTTCTGCTTACCAAAGTATGGGGCTA
TGATTCCGAAGTTGAAACCAACGTGGTCGATGTTTATATCAGATATCTCCGAAACAAGATTGATCGTCCAGGTGAGAACA
GTTATATTCAAACAGTTAGAGGTACGGGGTACGTGATGCGGTCATGA

Protein sequence : 
MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGMEVARRLREKKNTPIIMMTA
RDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQIENDQQKNNKKSVTFKDLTIEKESRIVRRGDEVINLTKRE
YELLLTLMENVDVVLARDVLLTKVWGYDSEVETNVVDVYIRYLRNKIDRPGENSYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-31 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 6e-74 72
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 1e-47 53
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 1e-47 53
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 1e-47 53
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 1e-47 53
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 1e-47 53
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 1e-47 53
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 1e-47 53
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 1e-47 53
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 5e-44 52
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator BAC0308 Protein 5e-32 42
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator BAC0125 Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-35 43
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator VFG0596 Protein 4e-32 42
Lbuc_1195 YP_004398513.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-32 41