Gene Information

Name : Lbuc_1032 (Lbuc_1032)
Accession : YP_004398354.1
Strain : Lactobacillus buchneri NRRL B-30929
Genome accession: NC_015428
Putative virulence/resistance : Unknown
Product : Tyrosine recombinase xerC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1094300 - 1095190 bp
Length : 891 bp
Strand : +
Note : TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; Tyrosine recombinase XerD; KEGG: lps:LPST_C1520 integrase/recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage

DNA sequence :
ATGATGCACGAACAAATTGAGGACTATCTTCATTATTTACGGGTCGAACGCGGCCTTTCAGATAATACAATTAAAAGTTA
TCGGCAGGATCTGCAGGAGGCCGGTGCTTTTTTTGACAAACACGCCAAATCAATTGCTGACATTGACCAGTTTGTCATCT
TGGATTATTTAGAAACCCTTCAACGGCAGCATAAAGCCCGGAACACGGTTATCAGGGTGGTCTCGACATTACGGCGGTTC
TTCCAGTACTTGGTTCAATTCCACGTGATTGTTGACGATCCGATGCTCAAGGTTGATTCGCCTAAAAAGGCCCAGACACT
GCCGGACGTTTTGACTGTGGCCCAAGTTAATCAGTTACTATCGATGCCGGATACTCATAAAAAATTAGGTCTGCGCGACC
GCGCGATCTTAGAGACGCTGTATGCCACCGGCCTGCGGGTCAGTGAACTGGTTAACTTGAAGTTGGGTGATTTGCATTTG
CCGATGAACTTGCTGCAGACAATTGGGAAGGGCGACAAAGAGCGGATCATCCCCATCAGCGACGTGGCGATCGACTGGTT
GAATCAATACATTCAATCGACGCGTGTCCAACTACTTTCGGGAAGGCCCAACTCAGAGTTCCTATTTTTAAATGCCCACG
GTCACCAACTGACCCGCCAGGCAATCTGGCAGATGATTAAAAAATATGTCAACCAGGCCGGCATCAAACGCCATGTCACA
CCACATACACTGCGGCATTCATTTGCGACCCACCTGCTTGAAAACGGGGCCGACTTAAGAATCGTTCAGGAACTGTTGGG
GCATTCCGATATTTCGACGACTCAAATCTACACCCACGTTTCTCATAAGCATTTAACGGAAGTTTATAATAAATATCATC
CGCGAGCATAA

Protein sequence :
MMHEQIEDYLHYLRVERGLSDNTIKSYRQDLQEAGAFFDKHAKSIADIDQFVILDYLETLQRQHKARNTVIRVVSTLRRF
FQYLVQFHVIVDDPMLKVDSPKKAQTLPDVLTVAQVNQLLSMPDTHKKLGLRDRAILETLYATGLRVSELVNLKLGDLHL
PMNLLQTIGKGDKERIIPISDVAIDWLNQYIQSTRVQLLSGRPNSEFLFLNAHGHQLTRQAIWQMIKKYVNQAGIKRHVT
PHTLRHSFATHLLENGADLRIVQELLGHSDISTTQIYTHVSHKHLTEVYNKYHPRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 7e-55 42
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 7e-55 42