Gene Information

Name : Alide2_4554 (Alide2_4554)
Accession : YP_004390373.1
Strain : Alicycliphilus denitrificans K601
Genome accession: NC_015422
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4773952 - 4774626 bp
Length : 675 bp
Strand : -
Note : KEGG: ajs:Ajs_3999 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduct

DNA sequence : 
ATGCGCATCCTCATCGCCGAAGACGACCAGGTGCTGGCCGACGGCCTGCTGCGCACGCTGCGCGGCTCCGGCGCCGTCGT
GGACCATGTGGCCAGCGGCAGCGAGGCCGATGCCGCGCTGCTCACCAACAACGAGTTCGACCTGCTGATCCTGGACCTGG
GTCTGCCCCGGCTGCACGGGCTGGAGGTCCTCAAGCGCCTGCGCGGGCGCGGCTCGGCCCTGCCGGTGCTCATCCTCACC
GCGGCCGACGGCATCGAGGAGCGCGTCAAGGGCCTGGACCTGGGGGCCGACGACTACATGGCCAAGCCCTTCGCCCTGTC
CGAGCTGGAGGCGCGCGTGCGCGCGCTCACGCGCCGCGGCATGGGCGGCACCAGCGCCACCATCAAGCACGGCCCGCTGG
TGTACGACCAGGCCGGCCGCGTGGCCACCATAGACGGCAAGATGGTGGAGCTGTCCGCGCGCGAGCTGGGCCTGCTGGAG
GTGCTGCTGCAGCGCGCCGGCCGCCTGGTGAGCAAGGAGCAGCTCGTCGAGCGCCTGTGCGAATGGGGCGAGGAGGTGAG
CAACAACGCCATCGAGGTCTACATCCACCGCCTGCGCAAGAAGATAGAGCGTGGCCCGATACGCATCGCCACCGTGCGCG
GCCTGGGCTACTGCCTCGAAAAGATTCCCGGTTAA

Protein sequence : 
MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGSEADAALLTNNEFDLLILDLGLPRLHGLEVLKRLRGRGSALPVLILT
AADGIEERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGGTSATIKHGPLVYDQAGRVATIDGKMVELSARELGLLE
VLLQRAGRLVSKEQLVERLCEWGEEVSNNAIEVYIHRLRKKIERGPIRIATVRGLGYCLEKIPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-32 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_4554 YP_004390373.1 winged helix family two component transcriptional regulator BAC0487 Protein 6e-30 46
Alide2_4554 YP_004390373.1 winged helix family two component transcriptional regulator BAC0083 Protein 6e-30 46
Alide2_4554 YP_004390373.1 winged helix family two component transcriptional regulator BAC0638 Protein 1e-21 44
Alide2_4554 YP_004390373.1 winged helix family two component transcriptional regulator BAC0347 Protein 4e-27 42
Alide2_4554 YP_004390373.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_4554 YP_004390373.1 winged helix family two component transcriptional regulator VFG0473 Protein 2e-31 43
Alide2_4554 YP_004390373.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-26 42