Gene Information

Name : Alide2_4389 (Alide2_4389)
Accession : YP_004390210.1
Strain : Alicycliphilus denitrificans K601
Genome accession: NC_015422
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4589621 - 4590535 bp
Length : 915 bp
Strand : -
Note : PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region

DNA sequence : 
TTGAAGAACTACATCGACCGCCACCGTGATGACTACGGGGTCGAGCCCATCTGCCGGGTGCTGCAGATGGCCCCGTCGTG
TTACTGGCGCCACGCAGCCCGGCAACGCAACCCGCAACTGCGCAGTCAACGCGTCCAGCGTGACGAGGGTTTGAAAGCCG
ACATCCAGCGCGTGTGGCACGCCAACTGGCAGGTCTACGGGGCCGATAAGGTCTGGCTGCAGATGAACCGCGAGGGCATC
GCAGTGGCGCGCTGCACGGTCGAGCGCCTGATGCGTGCCATGGGCTTGCAAGGAGCACGCCGTGGCAAGACAGTGCGCAC
CACCACGCCGGACACATCGGCACCGTGCCCGCTGGACCACGTCAACCGGCAATTCAAGGCCAGCCGGCCCAACGAGCTGT
GGGTGTCGGACTTCACCTACGTCTCCACCTGGCAGGGCTGGTTGTACGTGGCCTTCGTGGTGGACGTGTACGCCCGGCGC
ATCGTGGGCTGGCGGGTCAGCCGCAGCATGCAAACGGACTTCGTGCTGGATGCGCTGGAGCAGGCGCTGTATGACCGCCA
GCCAGCAGCCCATGCCTTGACGCACCATTCCGACAGGGGCAGTCAATACGTTTCCATACGCTACACCGAACGCTTGGACC
AGGCGGGTATCCAGCCATCAGTGGGCAGCCGGGGTGACAGCTACGACAACGCACTGGCCGAGACCATCAACGGGCTGTAC
AAGGCCGAGCTGATTCACCGCCGGGGACCCTGGAAGACCAGGGAATCCGTGGAGCTGGCCACCCTGCAGTGGGTGCACTG
GTTCAATCACGTCCGACTGCTCACGCCGATTGGGGGCATCCCTCCGGCAGAAGCTGAGGCAAACTACTGGAGGCAACTCG
CCGTCAGCGACACCTCGACAGAGGTGTCAACTTAA

Protein sequence : 
MKNYIDRHRDDYGVEPICRVLQMAPSCYWRHAARQRNPQLRSQRVQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGI
AVARCTVERLMRAMGLQGARRGKTVRTTTPDTSAPCPLDHVNRQFKASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR
IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQPSVGSRGDSYDNALAETINGLY
KAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTPIGGIPPAEAEANYWRQLAVSDTSTEVST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 3e-59 62
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-59 62
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-66 62
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-74 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-76 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 8e-76 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 8e-76 60
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-76 60
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 7e-75 59
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-76 59
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 9e-77 59
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 7e-77 59
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-77 58
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-77 58
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 5e-77 58
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-78 58
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-74 58
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-74 58
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-74 58
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-55 57
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 9e-74 56
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-52 45
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_4389 YP_004390210.1 integrase catalytic subunit VFG1602 Protein 5e-74 56