Gene Information

Name : Alide2_4193 (Alide2_4193)
Accession : YP_004390024.1
Strain : Alicycliphilus denitrificans K601
Genome accession: NC_015422
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4383832 - 4384587 bp
Length : 756 bp
Strand : -
Note : KEGG: ajs:Ajs_3797 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein

DNA sequence : 
ATGCGTAAGTGCATACGCCTGACGGCGGGCCTGGCCTGCCTGCTGCTCGCGGGCGCGGCCCTTGGGCAGCAGCAGGGCGG
CGCCGGCACGCTGCCGCTCGTGGTCGGCTCGGGCGCGGGCGGGACCAGCTATTCGGTGCCGATACAGACGCTGCTGTTCT
TCACCGCGCTGTCGTTCCTGCCGGCGGTGCTGCTCATGATGACGGGCTTCACGCGCATCGTCATCGTGCTGTCGCTGCTG
CGCCAGGCCATAGGCACGCAGCAGGCGCCGCCCAACCAGGTGGTGGTGGGCCTGTCGCTGTTTCTCACGCTGTTCGTCAT
GGGGCCGACGCTGGACAAGGTGTACCAGGAGGCCTACGTGCCCTACACCACCAACGCGCTGTCGTTCGAGCAGGCGCTCG
CCAAGGCCGAGGCCCCCATGCGCGGCTTCATGCTCAAGCAGACGCGCCAGTCCGACTTCGCGCTGTTCGCGCGCCTGGCC
AAGCTGGACGAGGGCGTGACGGCCGAGACCGCGCCGCTGCGCGTGCTGGTGCCGGCCTTCGTGACCAGCGAGCTCAAGAC
GGCGTTCCAGATCGGCTTCATGGTCTTCATCCCGTTCCTGATCATCGACATGGTGGTGTCCAGCGTGCTCATGTCGCTCG
GGATGATGATGCTCTCGCCGGTGCTGGTGGCGCTGCCGTTCAAGCTCATGCTGTTCGTGCTGGCCGATGGCTGGAACCTG
CTCATCGGCTCGCTGGCCGCGAGCTTTGCCACGTGA

Protein sequence : 
MRKCIRLTAGLACLLLAGAALGQQQGGAGTLPLVVGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLL
RQAIGTQQAPPNQVVVGLSLFLTLFVMGPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQSDFALFARLA
KLDEGVTAETAPLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNL
LIGSLAASFAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 8e-25 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 8e-25 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-25 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-25 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-25 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-25 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-25 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-25 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-25 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-24 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-24 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-24 41
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-24 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 7e-24 41
escR AAC31528.1 L0049 Virulence LEE Protein 1e-24 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-24 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-24 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-24 41
escR AAK26700.1 EscR Virulence LEE Protein 1e-24 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-24 41
escR AAL57527.1 EscR Virulence LEE Protein 1e-24 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_4193 YP_004390024.1 flagellar biosynthetic protein FliP VFG2338 Protein 9e-61 67
Alide2_4193 YP_004390024.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-61 66
Alide2_4193 YP_004390024.1 flagellar biosynthetic protein FliP VFG1259 Protein 9e-57 62
Alide2_4193 YP_004390024.1 flagellar biosynthetic protein FliP VFG2016 Protein 5e-50 56
Alide2_4193 YP_004390024.1 flagellar biosynthetic protein FliP VFG0519 Protein 3e-25 42
Alide2_4193 YP_004390024.1 flagellar biosynthetic protein FliP VFG0827 Protein 7e-25 41