Gene Information

Name : Alide2_3899 (Alide2_3899)
Accession : YP_004389736.1
Strain : Alicycliphilus denitrificans K601
Genome accession: NC_015422
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4060432 - 4061100 bp
Length : 669 bp
Strand : +
Note : KEGG: vap:Vapar_2384 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver d

DNA sequence : 
ATGCTGCACCCCATGCGCCTGCTGCTTGTAGAGGACGACACCATGATCGGCGAGGCCGTGCGCGACCTGCTGCGCGCCGA
GCATTACGCCGTCGACTGGGCCACCGACGGCGACATGGCCGACGCCGCGCTCGCCACCCAGCAGTACGACCTTGTGCTGC
TGGACCTGGGCCTGCCGCGCCGCGATGGCCTGGCCGTGCTGCGGTCGCTGCGCGCGCGCAAGGACCGCACGCCCGTCCTG
ATCGCCACCGCGCGCGACGGCGTGGCCCAGCGCGTCGAGGGGCTGGACGCCGGCGCCGACGACTACGTGCTCAAGCCCTA
TGACGCGGGCGAGCTGCTGGCGCGCATACGCGCGCTGCTGCGCCGCGCGAGCGGGCGGGCCGAGCCGGTGTACGAGCACC
AGGGCGTCACGCTCAACCCCGGCACGCGCGAGGCCACGGTGCAGGGCCGGCCGGTGGTGCTGTCGGCGCGCGAATGGGCG
GTGCTCGAACCCCTGATCGCGCGCCCGGGCATGGTGCTGTCGCGCCAGCAGATCGAAGACAAGCTCTACGGCTGGGGCGA
CGAGGTCAGCAGCAACGCCGTCGAGGTCTACGTGCACGGCCTGCGCAAGAAGCTCGGGGCTCATATCGTGCTCAACGTGC
GCGGCCTCGGCTACATGGTGCCCAAATGA

Protein sequence : 
MLHPMRLLLVEDDTMIGEAVRDLLRAEHYAVDWATDGDMADAALATQQYDLVLLDLGLPRRDGLAVLRSLRARKDRTPVL
IATARDGVAQRVEGLDAGADDYVLKPYDAGELLARIRALLRRASGRAEPVYEHQGVTLNPGTREATVQGRPVVLSAREWA
VLEPLIARPGMVLSRQQIEDKLYGWGDEVSSNAVEVYVHGLRKKLGAHIVLNVRGLGYMVPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-21 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_3899 YP_004389736.1 winged helix family two component transcriptional regulator BAC0487 Protein 5e-25 43
Alide2_3899 YP_004389736.1 winged helix family two component transcriptional regulator BAC0197 Protein 4e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_3899 YP_004389736.1 winged helix family two component transcriptional regulator VFG0473 Protein 4e-22 42