Gene Information

Name : Alide2_2754 (Alide2_2754)
Accession : YP_004388622.1
Strain : Alicycliphilus denitrificans K601
Genome accession: NC_015422
Putative virulence/resistance : Virulence
Product : two component heavy metal response transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2885099 - 2885764 bp
Length : 666 bp
Strand : +
Note : TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: ajs:Ajs_1461 two component heavy metal response transcriptional

DNA sequence : 
ATGAAGATATTGATCGTCGAAGATGAGCCTAAAACCGGTGAATACCTTCGCCAGGGATTGAGCGAGGCCGGATTTGTGGC
CGACCTGGCTCAAAACGGTAGCGATGGGCTGCACCTGGCACTCCAAGGTGAGTACGACCTGGTGATCCTGGATGTCATGC
TGCCCGGACTGGATGGCTGGCAGGTGCTGCAGTCCCTGCGCAATCGTGGCTTGCAGATGCCTGTGCTGTACCTGACGGCC
CGGGACCAGGTGGAAGATCGGGTCAAAGGGTTGGAATTGGGCGCTGATGACTACCTGGTCAAGCCCTTTTCATTCGCCGA
GTTGCTGGCCCGTGTACGGACAATCTTGCGCCGGGGCCGAGGAGGCACCGAAACCAACACATTGCGCGTGGCTGACCTGG
AACTTGATCTGCTGCGCCGACGGGTCTCGCGGGGTGGCCGCCGCATTGACCTGACAGCCAAAGAATTTGGTTTGCTGGAG
TTGCTGTTGCGCAGGCATGGAGAAGTGCTTCCTCGCTCGCTGATTGCCTCCCAGGTGTGGGACATGAACTTCGACAGCGA
CACCAACGTGATCGAAGTGGCGATGCGCCGCTTGCGCCTAAAGATCGACGAAGGCCAGGACGTCAAGTTGAACCGCCCCG
GCTTTCAAGGAGGCCGATTGGTTTAA

Protein sequence : 
MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQVLQSLRNRGLQMPVLYLTA
RDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGRGGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLE
LLLRRHGEVLPRSLIASQVWDMNFDSDTNVIEVAMRRLRLKIDEGQDVKLNRPGFQGGRLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-46 61
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-45 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator BAC0638 Protein 2e-52 69
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator BAC0083 Protein 2e-51 69
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator BAC0197 Protein 7e-52 68
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator BAC0111 Protein 8e-51 66
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator BAC0308 Protein 1e-48 64
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator BAC0347 Protein 2e-46 63
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator BAC0125 Protein 2e-49 63
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator BAC0487 Protein 2e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator VFG0596 Protein 2e-46 61
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator VFG1390 Protein 2e-28 45
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator VFG1386 Protein 9e-27 44
Alide2_2754 YP_004388622.1 two component heavy metal response transcriptional regulator VFG1389 Protein 4e-23 42