Gene Information

Name : Alide2_1960 (Alide2_1960)
Accession : YP_004387851.1
Strain : Alicycliphilus denitrificans K601
Genome accession: NC_015422
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2058590 - 2060107 bp
Length : 1518 bp
Strand : +
Note : KEGG: rpf:Rpic12D_0690 hypothetical protein

DNA sequence :
ATGACCCTCTACACGACCGACTACCTGGAGTATTACCTGACGCTCGTCGGGTGGATCGTCAACAACGGCATCTGGAACAT
TCTCGTGGCCAGCGGCGTCTTCGCGCTGCCCTTCGTGGTGATCGTCGTGCAGGAGTGGCTGCGCGCACGCGCCGAGGGCG
CCGACGAGGGCAACAAGGGCGTGCTGTCCTCGATGCGCATCGAGAACCGCGTGTGGGTGGCGATCGTCGTCATCCTGTTC
GCGGGCGTGCCCTTCATCCCGGTCGACCTCAGCACGATCCGGTTCGACACGACGCGCTCCGCGCAGTGCCAGGTCAGCGT
CCCGCAGCCCAACGACACGGGCTGGTCCACCGCCTACACCACCCTCAACAACCAGAGCGCGCTGGTGCCGGTGTGGTGGT
TCTTCATGCACGCCATCTCGAAGGCGGTCACGGGCGGCGCGGTGGCGGCGATTCCCTGCGGCACGGACCTGCGGCAGATG
CGCATGGACGTGGATGCGACGCGCATCGACGACCCGGTGCTGGCCCAGGAGGTGGGTGACTTCGTGCACGACTGCTACGG
CCCGTCGCGGGCCAAGCTGTTCATGAGCCGGCCCACGCTCTCCGACGACGACATGAACGACGTGACCTGGATCGGGTCGA
GCTACTTCCTGGACAACGCAGGCTTCTACGACACCTACCACTCCAACACGCCCCGCACGGCCTGGCCCTACGACGCGACG
CGCGATGCGGGGCTGGCCCAGGTGGACAGCGGCGGGGGCTACCCCACGTGTCGGCAGTGGTGGTCCGACGGCAACAGCGG
CCTGCGCGCTCGGCTGCAGGCTCAGGTCGATCCCGACCTGCTGACGCGCATCGGCCGCTGGGCGGGCTTCCTGTCGCAGG
GCGAGGTGAACGACTCGGTGATCCGGGCCGTGGTCTCGCCAAGGCAGCAGAAGATGAATCAGGGCTCGGTCTACACCGAC
TACGGCGGGCAGATCGAGAAGACGCTGCCCAACATCGTGACGCGCGGCGCCGGCGACCTGGGCATGACGATGGGCTCGCT
CGGCTTCTTCCCGGCGATGGATGTGGTGCGGCAGGCATTGCCGATGGTGCTGTCGCTGCTCAAGATGGCGCTGGTGGTCT
GCATCCCGCTGGTGCTGGTTTTCGGCACCTACGAGCTGAAGGCGCTGGTCGCGGTGAGCTGTGTGCAGTTCGCGCTGTTC
TTTGTGGACTTCTGGTTTCAGTTGGCTCGCTGGCTTGACTCCACGATCCTGGATGCACTCTACGGATGGGGGTTCGGGGC
GAACCGACCGCACAGCAACTTCGATCCGCTGATCGGGCTGAACAACGCCTTCGGCGACATGCTGCTCAACTTTGTCATGG
CGACGATGTTCATCGTGCTGCCGACGTTTTGGGTGGCCTCGCTCGGCTGGGTTGGTGTGCGTGCCGGAAACGCGATTCAG
GGACTGGCCGCCGGAACACGCGATGCACAAGCCGCGGGAGGCAAAGGCGCTGGGGTAGCACTGAAAGCTGTGAAATAG

Protein sequence :
MTLYTTDYLEYYLTLVGWIVNNGIWNILVASGVFALPFVVIVVQEWLRARAEGADEGNKGVLSSMRIENRVWVAIVVILF
AGVPFIPVDLSTIRFDTTRSAQCQVSVPQPNDTGWSTAYTTLNNQSALVPVWWFFMHAISKAVTGGAVAAIPCGTDLRQM
RMDVDATRIDDPVLAQEVGDFVHDCYGPSRAKLFMSRPTLSDDDMNDVTWIGSSYFLDNAGFYDTYHSNTPRTAWPYDAT
RDAGLAQVDSGGGYPTCRQWWSDGNSGLRARLQAQVDPDLLTRIGRWAGFLSQGEVNDSVIRAVVSPRQQKMNQGSVYTD
YGGQIEKTLPNIVTRGAGDLGMTMGSLGFFPAMDVVRQALPMVLSLLKMALVVCIPLVLVFGTYELKALVAVSCVQFALF
FVDFWFQLARWLDSTILDALYGWGFGANRPHSNFDPLIGLNNAFGDMLLNFVMATMFIVLPTFWVASLGWVGVRAGNAIQ
GLAAGTRDAQAAGGKGAGVALKAVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C40 AAN62133.1 hypothetical protein Not tested PAGI-2(C) Protein 2e-180 76
ORF SG48 AAN62270.1 hypothetical protein Not tested PAGI-3(SG) Protein 2e-180 73
pph92 CAI36133.1 hypothetical protein Not tested PPHGI-1 Protein 1e-149 61
EXA17 ABD94626.1 conserved hypothetical protein Not tested ExoU island A Protein 7e-141 57
RL014 AAP84141.1 conserved hypothetical protein Not tested PAPI-1 Protein 9e-139 57
unnamed ABR13354.1 hypothetical protein Not tested PAGI-5 Protein 4e-139 57
STY4579 NP_458664.1 putative membrane protein Not tested SPI-7 Protein 2e-94 46
t4276 NP_807874.1 hypothetical protein Not tested SPI-7 Protein 2e-94 46
PMI2570 YP_002152289.1 hypothetical protein Not tested Not named Protein 1e-85 42
YE3465 YP_001007626.1 hypothetical protein Not tested YAPI Protein 2e-96 41
YpsIP31758_3699 YP_001402653.1 hypothetical protein Not tested YAPI Protein 5e-95 41
api56 CAF28530.1 putative membrane protein Not tested YAPI Protein 2e-95 41