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Name : Alide2_1911 (Alide2_1911) Accession : YP_004387805.1 Strain : Alicycliphilus denitrificans K601 Genome accession: NC_015422 Putative virulence/resistance : Unknown Product : conjugative coupling factor TraD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3505 EC number : - Position : 2012598 - 2014757 bp Length : 2160 bp Strand : + Note : TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; KEGG: rpf:Rpic12D_0673 hypothetical protein DNA sequence : ATGGCCCAGTCCCAAGCCGTCGAAGTCTTGCTGCGGCCAGCGGTGGAGCTATACACCGTCGCGGTCTGTGCGGGCGCCGC GTTTCTGTGCCTGGTGGCCCCGTGGTCGCTCGCGCTGAGCCCCTTGCTGGGCCTGGGCAGCGCGCTAGCCTTCCTGACCT TCGGTGCGCTGCGCTTGCACGACGCCTGGGCCATCCTGCGCTACCGGCGCAACATCCGGCGCCTGCCGCGCTATGTGATG ACCAGCCGCGACGTGCCGGTCAGCCAGCAGCGGCTCTTCGTCGGCCGGGGCTTCCGCTGGGACCAGCGGCACACGCACCG GCTGATGCAGACCTACCGGCCGGAGTTCCGCCGCTACGTCGAGCCGACGGCGATCTACCGGGCAGCGCGGCGCATGGAAG AGCGCCTGGAGTTCGCGCCGTACCCGCTGTCCAAGATGGCGAAGGCCCTGGCCTGGGACAGTCCGCTCAACCCGGCACGG CCGCTGCCGCCGGTGGGAGGCCTGCCGCGGCTGCACGGCATCGAGCCGCACGAGGTCGACGTCACGCTGCCGTTGGCCGA ACGGGTCGGCCATTCGTTGGTGCTCGGCACGACGCGTGTCGGCAAGACCCGCCTGGCCGAGTTGTTCATCACGCAGGACA TCCGGCGCAAGGTCAATGGGCAGCACGAGGTCGTAATCGTCTTCGACCCCAAGGGCGATGCGGACCTCTTGAAGCGCATG TATGTGGAGGCCAAGCGCGCCGGGCGCGAAGGCGAGTTCTACGTCTTCCACCTGGGCTGGCCGGACATCTCGGCGCGCTA CAACGCGGTGGGCCGCTTCGGGCGCATCAGCGAAGTCGCCACGCGCATCGCTGGCCAGCTCTCCGGTGAAGGCAACAGCG CGGCTTTCCGCGAGTTTGCCTGGCGCTTCGTCAACATCATCGCGCGTGCCCTGGTGGAGCTGGGGCAGCGGCCCGATTAC CTGCTGATCCAGCGCCACGTCATCAACATCGATGCGCTGTTCATCGAGTACGCGCAGCACTACTTCGCCAAGAACGAGCC GAAGGCCTGGGAGGTCATCGTCCAGCTCGAAGCCAAGCTGAACGACAAGAACATCCCGCGCAACATGATCGGCCGCGAAA AGCGCGTCGTCGCGCTGGAGCAGTACCTGTCGCAGGTGCGCATCTACGACCCGGTGCTCGACGGCCTGCGCAGCGCGGTG CGCTACGACAGGACGTACTTCGACAAGATCGTCGCATCGCTGCTGCCGCTGCTGGAGAAGCTGACCACCGGCAAGATCGC GCAGTTGCTGGCGCCGAACTATTCGGACCTCGCCGACCCACGCCCGATCTTCGACTGGATGCAGATCATCAGGAAGCGGG CCGTGGTCTACGTCGGGCTCGATGCGCTGTCGGACGCGGAAGTCGCGGCGGCGGTCGGCAACTCGATGTTCTCCGACCTC GTATCCGTCGCGGGTCACATCTACAAGTTCGGCATCGACGACGGCCTGCCGGATGCCGCGACGGGCATCAAGGTGCCCAT CAACGTCCATGCCGACGAGTTCAACGAACTCATGGGCGATGAGTTCATCCCGATGGTCAACAAGGGCGGCGGCGCAGCCG TCCAGGTCACGGCCTACACGCAGACCCTCTCGGACATCGAGGCCCGCATCGGCAACCGCGCGAAGGCGGGCCAGGTCGTG GGCAACTTCAACAACCTGTTCATGCTGCGCGTGCGCGAGACCGCCACGGCCGAACTGCTGACGCGCCAACTGCCCAAGGT CGAGGTCTACACGACGACAGTGATGAGCGGCGCCACCGACAGCTCCGACCCGACCGGCAACACCGCCTTCACGTCGAACA CGCAGGACCGCATCAGCAGCAACAGCGTGCCGCTGATCGAGCCGGCGCACGTGGTGGGCCTGCCCAAAGGCCAATGCTTC GCGCTGATCGAGGGCGGGCACCTGTGGAAGGTGCGCATGCCGTTGCCGGCACTGGACCCCGACGAGGCCATGCCCAAGGA TCTGCAGGAGCTGGCCGGCTACATGCGGCAGCACTACGTCGAGGCCGGCGAGTGGTGGGACAACAAGGGGCTTCCCGGCC TGCAGGACCAGGCGCTGCCCGACGATCTGCTGGCCGACTTCAAGCAGATGGCGGGCGCGGATGAAGAGGCCACGGCATGA Protein sequence : MAQSQAVEVLLRPAVELYTVAVCAGAAFLCLVAPWSLALSPLLGLGSALAFLTFGALRLHDAWAILRYRRNIRRLPRYVM TSRDVPVSQQRLFVGRGFRWDQRHTHRLMQTYRPEFRRYVEPTAIYRAARRMEERLEFAPYPLSKMAKALAWDSPLNPAR PLPPVGGLPRLHGIEPHEVDVTLPLAERVGHSLVLGTTRVGKTRLAELFITQDIRRKVNGQHEVVIVFDPKGDADLLKRM YVEAKRAGREGEFYVFHLGWPDISARYNAVGRFGRISEVATRIAGQLSGEGNSAAFREFAWRFVNIIARALVELGQRPDY LLIQRHVINIDALFIEYAQHYFAKNEPKAWEVIVQLEAKLNDKNIPRNMIGREKRVVALEQYLSQVRIYDPVLDGLRSAV RYDRTYFDKIVASLLPLLEKLTTGKIAQLLAPNYSDLADPRPIFDWMQIIRKRAVVYVGLDALSDAEVAAAVGNSMFSDL VSVAGHIYKFGIDDGLPDAATGIKVPINVHADEFNELMGDEFIPMVNKGGGAAVQVTAYTQTLSDIEARIGNRAKAGQVV GNFNNLFMLRVRETATAELLTRQLPKVEVYTTTVMSGATDSSDPTGNTAFTSNTQDRISSNSVPLIEPAHVVGLPKGQCF ALIEGGHLWKVRMPLPALDPDEAMPKDLQELAGYMRQHYVEAGEWWDNKGLPGLQDQALPDDLLADFKQMAGADEEATA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 87 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 86 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 0.0 | 75 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 71 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 0.0 | 71 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 70 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 63 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 63 |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 0.0 | 63 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 5e-179 | 62 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 5e-179 | 62 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 0.0 | 62 |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 6e-179 | 59 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 1e-127 | 48 |
