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Name : Alide2_1884 (Alide2_1884) Accession : YP_004387778.1 Strain : Alicycliphilus denitrificans K601 Genome accession: NC_015422 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 1990101 - 1992131 bp Length : 2031 bp Strand : + Note : SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA t DNA sequence : ATGCGCGTGTTCCTCTGCGAGAAGCCGTCCCAGGGCAAGGACATCGCCCGTGTGCTGGGCGCTGGCCAACGCGGCAACGG CTGCTACAGCGGTGCGAGTGTCGTCGTGACCTGGTGCATCGGTCATCTGGTGGAGGCAGTTCCACCCGAAGGCTACGGCG AGCAATACAAGCGCTGGGCCATCGAGCAACTACCCATTGTTCCTGAGCGTTGGCGTGTCGAGCCCAAGGCGGCGACTGTG GCGCAGTTCAAGGTCGTGCAGCAACTCGTCGCCAAGGCGGGCGAACTCGTGATCGCGACCGACGCCGACCGCGAGGGCGA GATGATCGCCCGCGAGATCATCGACCTATGCGGATACCGCGGGCCGATTCAGCGCCTGTGGCTGTCGGCGCTCAACGATG CGTCGATCCGCAAGGCGCTGGGTGCGCTCAAGCCGTCCGCCGAGACGATGCCGCTGTACTTCTCCGCGCTCGCCCGATCG CGTGCCGACTGGCTGATCGGGATGAACCTGAGCCGCCTGTTCACGTTGCTCGGGCGCCAGGCCGGCTACAACGGCGTGCT ATCGGTCGGGCGCGTGCAGACGCCGACGCTCAAGCTGGTCGTGGACCGTGATCGCGAGATCGCGCGCTTCGTTTCGGTGC CGTTCTGGGCGACCGAGGTCGCACTGTCGCATGCAGGCCAGACCTTTGTCGCAAGCTGGACGCCACCCCAGGGCAGCACC GACGAAGCCGGCCGTTGCCTGCGGCAGCCGGTGGCGCAGCAGGCCGCCGAACGCCTGCGCGCGGCCGGCACCGCCCAGGT GCTGTCGGTGGAGACCGAGCGCGTGCGCGAAGGCCCGCCGCTGCCGTTCGACCTGGGCACCTTGCAGGAAGTGTGTTCCA AGCAGTTGGGCCTCGACGTGCAGGAGACGCTGGACATTGCCCAGGCGCTGTACGAGACGCACAAGGCGACGACGTATCCG CGCTCGGATTCGGGCCACCTGCCTGAGAGCATGCTGGCCGAGGTGCCGGCCGTGCTCGACAGCCTGGTCAAGACCGATCC CAGCCTGCGGCCGCTGATCGACCGCCTGGACCGCCAGCAGCGTTCGCGGGCCTGGAACGACGGCAAGGTCACGGCGCATC ACGGGATCATCCCCACGCTGGAGCCGGCCAATCTCTCGGCGATGACCGAAAAGGAGTTGGCCGTCTACCGGCTGATCCGT GCCCACTACCTCGCGCAGTTCCTGCCGCATCACGAGTTTGACCGGACGGTGGCGCAGCTCACGTGCGGCGGGCAGTCGCT GGTGGCGGTCGGCAAGCAGATCGCGACGGCCGGATGGCGCCAGGTGCTGGCGGCGCCGGCCCTTGACGACACGGACGGAG AGGATGCACGGCGCGGCCAAGTATTGCCAGCGTTGAAGGCTGGCGATGCCTGTCAAGTCAGTCAGGTCGAGCTGAAGGCA TTGAAGACGCTGCCGCCCAAGCCCTACACGCAGGGAGAACTGGTCAAGGCCATGAAGGGCGTCGCCAAGCTCGTGACCGA CCCGCGCCTGAAGCAGAAGCTGAAGGACACCACGGGCATCGGCACCGAGGCGACGCGCGCCAACATCATCAGCGGGCTGC TGGCCCGCGGCTATCTCTTGAAGAAAGGCCGCGCCATCCGTGCATCGGATGCGGCCTTCACGTTGATCGACGCCGTGCCG GCGGCCATCGCCGACCCGGGGACCACGGCGGTGTGGGAGCATGCACTGGACATGATCGAGGCCGGCCAGATGGCACTGGA CACCTTCATCGCCAAGCAATCGAGCTGGGTCGCCCGGCTCGTGCAGCAGTACCGCGGCGCCACGCTGGACCTCAAGCTGC CGCCCGCGCCGGACTGCCCGCAGTGCGGCGCCCCGATGCGCCAGCGTAGCAGCAAGAGCGGCGTGTTCTGGTCGTGCAGC CGCTACCCGGACTGCAAGGGTACGCAGCCGGTCGAAGATGCCGCGGCAGGCAAGCGCGGCGCATCCAGCCGCACCTACAG GGCACCGCGCCGGCGCCTCCAGGCGAACTGA Protein sequence : MRVFLCEKPSQGKDIARVLGAGQRGNGCYSGASVVVTWCIGHLVEAVPPEGYGEQYKRWAIEQLPIVPERWRVEPKAATV AQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYRGPIQRLWLSALNDASIRKALGALKPSAETMPLYFSALARS RADWLIGMNLSRLFTLLGRQAGYNGVLSVGRVQTPTLKLVVDRDREIARFVSVPFWATEVALSHAGQTFVASWTPPQGST DEAGRCLRQPVAQQAAERLRAAGTAQVLSVETERVREGPPLPFDLGTLQEVCSKQLGLDVQETLDIAQALYETHKATTYP RSDSGHLPESMLAEVPAVLDSLVKTDPSLRPLIDRLDRQQRSRAWNDGKVTAHHGIIPTLEPANLSAMTEKELAVYRLIR AHYLAQFLPHHEFDRTVAQLTCGGQSLVAVGKQIATAGWRQVLAAPALDDTDGEDARRGQVLPALKAGDACQVSQVELKA LKTLPPKPYTQGELVKAMKGVAKLVTDPRLKQKLKDTTGIGTEATRANIISGLLARGYLLKKGRAIRASDAAFTLIDAVP AAIADPGTTAVWEHALDMIEAGQMALDTFIAKQSSWVARLVQQYRGATLDLKLPPAPDCPQCGAPMRQRSSKSGVFWSCS RYPDCKGTQPVEDAAAGKRGASSRTYRAPRRRLQAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 78 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 78 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-168 | 51 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-168 | 51 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 4e-168 | 51 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-173 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 1e-168 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 1e-124 | 41 |
