|
Name : Alide2_1803 (Alide2_1803) Accession : YP_004387705.1 Strain : Alicycliphilus denitrificans K601 Genome accession: NC_015422 Putative virulence/resistance : Virulence Product : DNA repair protein RadC Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2003 EC number : - Position : 1904678 - 1905172 bp Length : 495 bp Strand : + Note : KEGG: ajs:Ajs_2184 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758 DNA sequence : ATGTCTCTTGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCAGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTCGAG CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC GGCGCTGATCCTGGCGCATCAGCATCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGCGATCACCGAGCGGTTGA AGAGCGCCCTGGCCACCGTCGATGCCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA GCCGGCTTGTTGTAG Protein sequence : MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDARVLDHFIVGKGSPYSFAE AGLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| radC | AAN62140.1 | putative DNA repair protein RadC | Not tested | PAGI-2(C) | Protein | 3e-51 | 72 |
| radC | AAN62275.1 | putative DNA repair protein RadC | Not tested | PAGI-3(SG) | Protein | 5e-38 | 61 |
| VC1786 | NP_231421.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 4e-26 | 54 |
| VC0395_A1383 | YP_001217326.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 4e-26 | 54 |
| VPI2_0034 | ACA01849.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 2e-26 | 54 |
| VC0510 | NP_230161.1 | DNA repair protein RadC-like protein | Not tested | VSP-2 | Protein | 2e-24 | 52 |
| unnamed | AAK00479.1 | unknown | Not tested | SHI-1 | Protein | 2e-21 | 50 |
| unnamed | CAD42098.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 2e-21 | 50 |
| yeeS | CAE85201.1 | YeeS protein | Not tested | PAI V 536 | Protein | 2e-21 | 50 |
| yeeS | NP_838484.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 3e-21 | 50 |
| yeeS | NP_708770.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 3e-21 | 50 |
| Z1657 | NP_287160.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 5e-20 | 49 |
| Z1217 | NP_286752.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 5e-21 | 49 |
| yeeS | AAZ04458.1 | putative RadC-like protein | Not tested | PAI I APEC-O1 | Protein | 1e-21 | 49 |
| z1217 | CAD33787.1 | Z1217 protein | Not tested | PAI I 536 | Protein | 2e-21 | 49 |
| ECO103_3589 | YP_003223446.1 | radC-like protein YeeS | Not tested | LEE | Protein | 3e-21 | 49 |
| unnamed | CAD66203.1 | hypothetical protein | Not tested | PAI III 536 | Protein | 6e-22 | 49 |
| yeeS | YP_854323.1 | radC-like protein YeeS | Not tested | PAI I APEC-O1 | Protein | 2e-21 | 49 |
| c5152 | NP_757000.1 | radC-like protein yeeS | Not tested | PAI II CFT073 | Protein | 2e-21 | 49 |
| yeeS | CAI43901.1 | YeeS protein | Not tested | LEE | Protein | 2e-21 | 49 |
| aec73 | AAW51756.1 | Aec73 | Not tested | AGI-3 | Protein | 2e-21 | 49 |
| unnamed | AAL67345.1 | intergenic-region protein | Not tested | PAI II CFT073 | Protein | 2e-21 | 49 |
| unnamed | AAL08475.1 | unknown | Not tested | SRL | Protein | 3e-21 | 49 |
| yeeS | CAI43846.1 | YeeS protein | Not tested | LEE | Protein | 2e-21 | 49 |
| yeeS | ADD91702.1 | YeeS | Not tested | PAI-I AL862 | Protein | 2e-21 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Alide2_1803 | YP_004387705.1 | DNA repair protein RadC | VFG1119 | Protein | 1e-26 | 54 |
| Alide2_1803 | YP_004387705.1 | DNA repair protein RadC | VFG1617 | Protein | 1e-21 | 50 |
| Alide2_1803 | YP_004387705.1 | DNA repair protein RadC | VFG0660 | Protein | 7e-22 | 50 |
| Alide2_1803 | YP_004387705.1 | DNA repair protein RadC | VFG1678 | Protein | 2e-22 | 49 |
| Alide2_1803 | YP_004387705.1 | DNA repair protein RadC | VFG1528 | Protein | 1e-21 | 49 |
| Alide2_1803 | YP_004387705.1 | DNA repair protein RadC | VFG1066 | Protein | 1e-21 | 49 |
