Gene Information

Name : Alide2_1764 (Alide2_1764)
Accession : YP_004387667.1
Strain : Alicycliphilus denitrificans K601
Genome accession: NC_015422
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1862139 - 1863044 bp
Length : 906 bp
Strand : -
Note : PFAM: Integrase, catalytic core; KEGG: xom:XOO_1208 transposase

DNA sequence : 
ATGAAGGCCTTCATCGATGACCACCGCGCCGACTACGGGGTCGAGCCGATCTGCAAGGTGCTGCCGATCGCCCCGTCGAC
CTACTACGCGCACGCGGCGCGCAAGGCTGATCCTGCGCTGCGTTCTCGGCGGGCGAAGCGCGACGATGCGCTGATGCCCC
AGATCCGGCGCGTATGGGATGAGAACTTCGCCGTCTACGGCGTGCGCAAGGTGTGGCGACAGATGCGCCGCGAGCGCGTC
GATGTGGCGCGCTGCACGGTGGCGCGGCTGATGAAGCGGCTGGGCCTGCGCGGCGTCATTCGCGGCAAGCCGGTGCGCAC
GACGGTCAGCGACCCGAAGCTGGCGTGCCCGCTGGACAAGGTGCAGCGCCAGTTCACCGCCGACCGGCCGAACGCGCTGT
GGGTGTCCGACTTCACCTACGTCTCGACCTGGCAGGGCTTCGTCTACGTCGCCTTCGTCATCGACGTGTTCGCCCGCCGG
ATCGTGGGCTGGCGAGCGTCGTCCTCGGCCCGCACTGACTTCGTGCTCGACGCGCTCGAGCAGGCGCTGTACGCCCGCAA
GCCGGTCGGCCCGGAAAGGCTCGTGCATCACAGTGACCGCGGCGTGCAGTACGTCTCCATTCGCTACACCGAGCGCCTGG
CCGAGGCCGGACTGGAGCCCTCGGTGGGCAGCGTGGGCGACTCCTACGACAACGCGCTGGCCGAGACCATCAACGGGCTC
TACAAGGCCGAGGTGATTCACCGGCGACCGTCCTGGCGAACGCGCGACGAAGTCGAATGGGCCACGCTCGCCTGGGTCGA
CTGGTTCAACAATCGTCGGCTGCTGGAGCCCATCGGCAACATCCCACCGGCCGAAGCCGAGCAAGCCTACTATTCACAAT
CCACCGGGTCCGTCGTGACGGCGTGA

Protein sequence : 
MKAFIDDHRADYGVEPICKVLPIAPSTYYAHAARKADPALRSRRAKRDDALMPQIRRVWDENFAVYGVRKVWRQMRRERV
DVARCTVARLMKRLGLRGVIRGKPVRTTVSDPKLACPLDKVQRQFTADRPNALWVSDFTYVSTWQGFVYVAFVIDVFARR
IVGWRASSSARTDFVLDALEQALYARKPVGPERLVHHSDRGVQYVSIRYTERLAEAGLEPSVGSVGDSYDNALAETINGL
YKAEVIHRRPSWRTRDEVEWATLAWVDWFNNRRLLEPIGNIPPAEAEQAYYSQSTGSVVTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-64 69
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 8e-61 68
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-64 68
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-72 68
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-81 66
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-83 66
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-83 66
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-83 66
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-83 66
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-82 65
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-85 65
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-84 65
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-82 64
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-82 64
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-82 64
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 8e-84 64
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-84 64
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-84 64
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-84 64
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 6e-84 64
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-81 63
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-58 63
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-53 48
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 9e-43 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide2_1764 YP_004387667.1 integrase catalytic subunit VFG1602 Protein 1e-81 63