Gene Information

Name : CbC4_6025 (CbC4_6025)
Accession : YP_004385822.1
Strain :
Genome accession: NC_015418
Putative virulence/resistance : Virulence
Product : efflux ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1131
EC number : -
Position : 23556 - 24260 bp
Length : 705 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGAAAGAAATTATATTAAAAACCAAAAACCTTACAAAAGTTTTTAATAATCAAATTAGCGTTGATAATTTATCAATAAC
CGTTGAACGCGGTGATATTTATGGATTTTTAGGTGAAAATGGGGCTGGAAAAACTACTACATTAAAGATGATACTTGGAT
TAATTCCACCTACTAGTGGTGAGATAACTTTATTTAATAAAAATATAAAGAAAAATGATTATTCTTATTTTAAAAAGATA
GGTTCAATAATTGAATATCCATCTTTTTATGAAAGTTTAACAGCCTATGAAAATTTAAAACTCCATGAGGAATATTTAGG
GATAAGTAATAGAAAACTTATAGATGAATCCTTGGACAAACTAGGAATTTTAAATGATAAGAATAAGAAGGTATGTGAAT
TTTCTCTTGGAATGAAACAACGTCTTGGAATAGCTCGTGCAATTTTGCATAAGCCTGAAATCTTAATACTAGATGAGCCT
ATAAATGGACTTGATCCAATGGGAATAAAAGAAATAAGGGAATTTATTAAAAACATAGCTTCAGTGGATAATACAACAGT
AATTATTTCAAGTCACATATTAAGTGAGATTCAGCTTCTTGCAACAAAGATTGGAATTATACACAAAGGAAAGTTATTAG
AAGAAATCAGTATTAGAACAGTAAAGGATTGTTATAAGGAATTAAGATTCAGGAGAAGAAAATAA

Protein sequence :
MKEIILKTKNLTKVFNNQISVDNLSITVERGDIYGFLGENGAGKTTTLKMILGLIPPTSGEITLFNKNIKKNDYSYFKKI
GSIIEYPSFYESLTAYENLKLHEEYLGISNRKLIDESLDKLGILNDKNKKVCEFSLGMKQRLGIARAILHKPEILILDEP
INGLDPMGIKEIREFIKNIASVDNTTVIISSHILSEIQLLATKIGIIHKGKLLEEISIRTVKDCYKELRFRRRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
epiF YP_186701.1 epidermin immunity protein F Virulence vSa¥â Protein 5e-28 52
bsaF NP_646577.1 hypothetical protein Not tested vSa¥â Protein 5e-28 52
epiF YP_494453.1 lantibiotic epidermin immunity protein F Not tested vSa¥â Protein 5e-28 52
bsaF YP_001332745.1 lantibiotic immunity protein F Not tested vSa¥â Protein 5e-28 52
cdd4 CAA63569.1 - Not tested PaLoc Protein 1e-44 50
sboF YP_006309913.1 SboF Not tested FWisland_1 Protein 6e-45 49
SPN23F_09830 YP_002510959.1 lantibiotic transport ATP-binding protein Not tested PPI-1 Protein 5e-33 48
Spaf_1123 YP_006309925.1 putative transport ATP-binding protein Not tested FWisland_1 Protein 7e-29 41