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Name : CbC4_4059 (CbC4_4059) Accession : YP_004385635.1 Strain : Genome accession: NC_015417 Putative virulence/resistance : Unknown Product : group II intron reverse transcriptase/mutarase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : - Position : 53652 - 55328 bp Length : 1677 bp Strand : + Note : putative conserved domain identified by match to the RT-like superfamily DNA sequence : TTGGAGACCAAGAAGAAACTTAGGCATAATGAATATTATGATGTACAAGATACTTTTGATACATTGTACTATAAAAGCCA AAAAGGTTATAACTTTTATAAATTAGTAAATATAATGTCAGACGAGGATAATATTAGATTAGCGTATAGAAACATAAAAT CTAACACAGGTAGTAAGACTAAGGGTACAGATGGTTCTACAATTAAAGACATAAATAATATAGATATTGATGAAGTAATA ACTAAAATCAAAACTATGTTTGATTTTTACACACCAAAATCTATAAGGAGAGTAGAGATACCTAAAGCTAATGGTAAAAC AAGACCCTTAGGTATACCCACTATTTGGGATAGATTATTCCAACAATGTATATTGCAAGTATTAGAGCCTATATGTGAAG CGAAGTTCCATAAACACAGTTATGGTTTTAGACCGAATAGGAGTACACATCACGCTATTACTAGGTCAGTGTACTTGATA AATATAACTAAACTATACCACTGTGTAGATGTAGATATAAAAGGATTCTTTGATAATGTTAATCATGGTAAACTACTGAA ACAGTTATGGGCATTAGGGGTAAAAGATAAAAAACTACTTAAAATAATATCTGTAATGCTAAAAGCACCAATAGAAGGCA TAGGGATACCTACAAAAGGAGTACCCCAAGGTGGTATACTAAGCCCTTTATTAAGTAATATAGTACTTAATGAACTAGAT TGGTGGGTATCTAATCAGTGGGAAACATTTAAAACTGATAAAGATTACACAAAATATAGAACCTCTAAAACAGGTAAAAT AGTGGTTGACCATAGTATTAGGAATAAAATGTTAAAGAAGAGTAAACTAAAAGAAATCTACATTGTTAGGTATGCCGATG ATTTTAAAATTTTTTGTAGAACTAGAAGTCAAGCAAAAGCTATAGATATTGCAGTAGGAGATATGCTTAAAAATAGGCTA GGATTAGAATGTTCAGCTGAGAAGTCTAAGGTATTGAATCTAAAGAAAAGCTATTCTGAGTTTTTAGGTTTTAAAATGAA AGCTGAATGGAAAAGAAATAAACTTAGAAAAACAAAAGATTATAAAACATTGTGGGTTGCTAAAACATATATGAGTGATA AAGCTAAAACTAACGCTACTACTAAAATTAGAAAAGAAATAAAGAAAATTAAAAAGAGACCAACGAAATCAAATATAAAT TCATATAACTCTGTGGTACATGGGATACAAAACTACTATAAAGTGGCTACCCATATAACAAAAAATTTGAGGGATATAAA CTATAGTTGTTCTCAGACCTTAAAAGGACTTAAAAATAATCGAACCGAAGCAAAAACTGAAAATCTATCTATGCACCAAC GTAAAAGATATAAAGGGTATAACCCTAAATACTTCATGATAAGTGGGGTAGTTATGTCACCTATATATGCTCAAAAGAAC GTAACACCTATAAACTTTAGTCAAGATATATGTAATTATACTAAAGTTGGTAGGGGGACAATACATCAGTCACTGAAGCA TATAAATAAGGATACTTTAAAATATATTAAAGAATCGTATATACCTACTATGAGTATAGAATATAATGACAATCGTATTA GTAAATATATTGCACAGCATGGTAAATGTATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATTTAAGGATGTAA Protein sequence : METKKKLRHNEYYDVQDTFDTLYYKSQKGYNFYKLVNIMSDEDNIRLAYRNIKSNTGSKTKGTDGSTIKDINNIDIDEVI TKIKTMFDFYTPKSIRRVEIPKANGKTRPLGIPTIWDRLFQQCILQVLEPICEAKFHKHSYGFRPNRSTHHAITRSVYLI NITKLYHCVDVDIKGFFDNVNHGKLLKQLWALGVKDKKLLKIISVMLKAPIEGIGIPTKGVPQGGILSPLLSNIVLNELD WWVSNQWETFKTDKDYTKYRTSKTGKIVVDHSIRNKMLKKSKLKEIYIVRYADDFKIFCRTRSQAKAIDIAVGDMLKNRL GLECSAEKSKVLNLKKSYSEFLGFKMKAEWKRNKLRKTKDYKTLWVAKTYMSDKAKTNATTKIRKEIKKIKKRPTKSNIN SYNSVVHGIQNYYKVATHITKNLRDINYSCSQTLKGLKNNRTEAKTENLSMHQRKRYKGYNPKYFMISGVVMSPIYAQKN VTPINFSQDICNYTKVGRGTIHQSLKHINKDTLKYIKESYIPTMSIEYNDNRISKYIAQHGKCISAIMGMQESDHLRM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2326 | NP_815981.1 | group II intron reverse transcriptase maturase | Not tested | Not named | Protein | 4e-96 | 44 |
| ef0012 | AAM75218.1 | EF0012 | Not tested | Not named | Protein | 7e-65 | 41 |
