Gene Information

Name : MDS_4889 (MDS_4889)
Accession : YP_004382672.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : two component, sigma-54 specific, transcriptional regulator, Fis family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5356104 - 5357444 bp
Length : 1341 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCGCTCAGGTCATAGTGGTCGACGACGAAGCGGCGATTCGCGAAGCGGTGCAGCAGTGGCTGGAACTGTCCGGGTT
CGAGGTGCGTACCTGCGCCAGTGCGGCCGAAGCCCTGGCGGTGGTGGACCGCGACTTCCCTGGCATTGTCGTCAGCGATG
TGCGCATGCCGGGCAGCGATGGCCTGCAACTGCTCGACAAGCTGCTGCAGATCGACAGCGATCTGCCGGTGATCCTGGTG
ACCGGCCACGGCGACGTGCCCATGGCGGTGCAGGCACTGCGTCAGGGCGCCTATGACTTCATCGAGAAGCCCTTCACCCC
CGAGCGCCTGCTCGACAGCGTGCGCCGTGCCTTGGACAAGCGCCGCCTGGTCTGCGAGAACCGCCAGTTGCGCCAGCAGG
TGGCCGACAAGGGCCGCATCGAAAGCCAGTTGATCGGCATTTCGCGGCCCATGGAAAACCTGCGCCGGCAGATCCTCGAA
CTCGCCGGCACCTCGGTCAACGTGTTGATCCGCGGCGAGACCGGTAGCGGCAAGGAGCGCGTGGCGCGCAGCCTGCACGA
CTTCAGCCCGCGCGCGCGCAAGGCTTTCGCCGCGCTCAACTGCGCGGCGATCCCCGAGACCATCTTCGAAAGCGAGTTGT
TCGGCCACGAGAGCGGTGCCTTCACCGGGGCCCAGGCCAAGCGCATCGGCCGTATCGAGCATGCCGACGGTGGCACCCTG
TTTCTCGACGAGGTGGAGAGCCTGCCGCTGGCGCAACAGGTCAAGCTGCTGCGTGTACTGCAGGAAAAGACCCTTGAGCG
CCTGGGTTCGAACAAGAGCATTCAGGTCGATCTGCGGGTGATTAGCGCAGCCAAGCCGGACCTGCTCGACGAGGTCAAGG
CCGGGCGTTTCCGCGAGGACCTGGTGTACCGCCTGAACGTCGCAACCCTGCACATTCCGCCGCTGCGCGAGCGGCGTGAG
GACATTCCGCTGCTGTTCGAGCATTTCGCCCACGAGGCCGCGCAACGTCATGGCCGCGAAGCGCCGCCGCTGGCACCGAG
CGAGCTGGCGCGCCTGCTCGGCCATGACTGGCCGGGCAACGTGCGTGAGCTGATCAACGCCGCTGAGCGCCATGCCCTGG
GGCTTTCCAGCCCACCGCCAGCCGAGCGCTTTGCCGGCCAGGCGCTGGCGCAGCAGATGGAGGCTTTCGAGGCGCAATGC
CTGCACAACGCCCTGCTGCAATGCCAGGGCAATATCGCTGCGGTGATGGAAATGCTGCAGCTGCCGCGCCGTACGCTCAA
CGAGAAAATGCAGCGTCACGGCCTGGCGCGCGGCGATTACCTGCCGGGTGGCGAGGAGTAG

Protein sequence : 
MSAQVIVVDDEAAIREAVQQWLELSGFEVRTCASAAEALAVVDRDFPGIVVSDVRMPGSDGLQLLDKLLQIDSDLPVILV
TGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRALDKRRLVCENRQLRQQVADKGRIESQLIGISRPMENLRRQILE
LAGTSVNVLIRGETGSGKERVARSLHDFSPRARKAFAALNCAAIPETIFESELFGHESGAFTGAQAKRIGRIEHADGGTL
FLDEVESLPLAQQVKLLRVLQEKTLERLGSNKSIQVDLRVISAAKPDLLDEVKAGRFREDLVYRLNVATLHIPPLRERRE
DIPLLFEHFAHEAAQRHGREAPPLAPSELARLLGHDWPGNVRELINAAERHALGLSSPPPAERFAGQALAQQMEAFEAQC
LHNALLQCQGNIAAVMEMLQLPRRTLNEKMQRHGLARGDYLPGGEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-53 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-53 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_4889 YP_004382672.1 two component, sigma-54 specific, transcriptional regulator, Fis family BAC0089 Protein 2e-71 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_4889 YP_004382672.1 two component, sigma-54 specific, transcriptional regulator, Fis family VFG1249 Protein 3e-63 47
MDS_4889 YP_004382672.1 two component, sigma-54 specific, transcriptional regulator, Fis family VFG1214 Protein 8e-64 41