Gene Information

Name : MDS_4752 (MDS_4752)
Accession : YP_004382535.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 5198395 - 5199147 bp
Length : 753 bp
Strand : +
Note : -

DNA sequence : 
ATGCTGCGCCGGCTGCTGCAAACCGGCCTGCTGCTGGCGGCGCTGTGCTGCCCGCTGCTGGCCCAGGCGGCCGGCGGCGA
CATCACCCTGTTCAACTTCAACGACACCGAAGACGGCCAGACCCTCAGCGTTAAGCTGCAGATTCTGCTGATCATGACGC
TGCTGGGCTTTCTCCCGGCCTTGCTGATGATGATGACCTGCTTCACCCGCTTCATCATCGTCCTGGCCATCCTGCGCCAG
GCCATCGGCCTGCAGCAGAGCCCGCCCAACCCGGTGCTGATCGGCATCGCCCTGTGCCTCACCCTGCTGGTGATGCGCCC
GGTGTGGCAGGAGATGTACACCGAGGCTTATGTGCCCTTCGAAGCCGACCAGATTAGCCTCGAGCAGGGGCTGGGCGAGG
GCAAGCGCATCATCAGCCAGTTCATGCTGGCGCAAACCAGCAAGAACTCGCTGGAGACCCTGGTCGCCCTCGCGGACGAG
GAAATGCCCGATGACCTGGCCCAACTGGATTTCTCCCTGCTGCTGCCGGCCTTCGTGTTGAGCGAGCTGAAGACGGCCTT
CCAGCTCGGCTTCATGATCTTCGTGCCGTTTCTGGTAATCGACCTGGTGGTGGCCAGCGTACTCATGGCGATGGGCATGA
TGATGCTGTCGCCAATGATGATCTCGCTGCCGTTCAAGCTGCTGGTCTTCGTTCTGGTGGACGGTTGGACGCTGCTGGTC
GGCACCCTCACCACCAGTATCCAGCCCTATTAG

Protein sequence : 
MLRRLLQTGLLLAALCCPLLAQAAGGDITLFNFNDTEDGQTLSVKLQILLIMTLLGFLPALLMMMTCFTRFIIVLAILRQ
AIGLQQSPPNPVLIGIALCLTLLVMRPVWQEMYTEAYVPFEADQISLEQGLGEGKRIISQFMLAQTSKNSLETLVALADE
EMPDDLAQLDFSLLLPAFVLSELKTAFQLGFMIFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFKLLVFVLVDGWTLLV
GTLTTSIQPY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-19 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-18 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-18 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-18 43
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 9e-22 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-16 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-16 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-21 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_4752 YP_004382535.1 flagellar biosynthesis protein FliP VFG2016 Protein 6e-41 55
MDS_4752 YP_004382535.1 flagellar biosynthesis protein FliP VFG1259 Protein 6e-41 55
MDS_4752 YP_004382535.1 flagellar biosynthesis protein FliP VFG2338 Protein 3e-39 53
MDS_4752 YP_004382535.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-41 52
MDS_4752 YP_004382535.1 flagellar biosynthesis protein FliP VFG0394 Protein 9e-19 43
MDS_4752 YP_004382535.1 flagellar biosynthesis protein FliP VFG0044 Protein 7e-18 42
MDS_4752 YP_004382535.1 flagellar biosynthesis protein FliP VFG2455 Protein 1e-17 42
MDS_4752 YP_004382535.1 flagellar biosynthesis protein FliP VFG0188 Protein 8e-17 42