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Name : MDS_4670 (MDS_4670) Accession : YP_004382453.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Virulence Product : sigma-54 factor interaction domain-containing protein Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 5118288 - 5119112 bp Length : 825 bp Strand : - Note : - DNA sequence : ATGAGTTTTCCACCTGGCTTCCCACCGCCCCTGACCTTTGCCGATTCGGACAAGAGCCCGCTGAGCATTCGGGCCAAGGC GCTGGTATTCGTCGATGCCCGTTCGCGCCAGTTGCGCGAGCGCGCCGAGGCGCTGGCGGACAATGGCCTGCCGTTGCTGA TTCTCGGTGAAACCGGTACCGGTAAGGAGTTGCTGGCGCGCTATATCCACCGCCAGAGCGAGCGCGCCGGCCTGTTCGTG GCAGTAAGCTGCGCGGCGATCAGCCCGCAGTGGGGCGAGGCCGAGCTGTTCGGGCATCTCGGCGGCGCCCATGTCGGCGC TGCCAGCAGCCGCGCCGGCTGGTTCGGTTCGGCCAATGGCGGCACGCTCTACCTCGACGAGATTGCCGATCTTTCTCGCA CGTTGCAGAGCAAACTGCTGGCCGCGCTGGAAACCCGCGAGGTGTATCGCGTCGGTGCCAGCCAGGCGTTGCCGGTGGAC GTGCGCCTGGTGGCGGCGAGCAGTATCGACCTGGCCCGCGCGGTGGCAGCCGGCACTTTCGACGAGCGACTCTACGCCTA CCTGTGCGACGGCCAACTGCGCTTCCCGGCATTGCGCGAGCGGGTCGGCGATATCCTGCCGCTGGCCGAATATTTCCTCG GTATTCATGCCTCGCGCCTGGACCTTGCGATACCGCCGATCAGCCCGGCAGCGCAGGCCGTACTGGAGTCCCATCGCTGG CCGGGCAATACCCGCGAACTGGAGAACGTCATTCACTTTGCCCTGCTGCTGGCTGGAAATGCAGAGATTGGGCCGGAGCA TCTGGAGTTGCCAGGGAGCGTCTGA Protein sequence : MSFPPGFPPPLTFADSDKSPLSIRAKALVFVDARSRQLRERAEALADNGLPLLILGETGTGKELLARYIHRQSERAGLFV AVSCAAISPQWGEAELFGHLGGAHVGAASSRAGWFGSANGGTLYLDEIADLSRTLQSKLLAALETREVYRVGASQALPVD VRLVAASSIDLARAVAAGTFDERLYAYLCDGQLRFPALRERVGDILPLAEYFLGIHASRLDLAIPPISPAAQAVLESHRW PGNTRELENVIHFALLLAGNAEIGPEHLELPGSV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 6e-39 | 44 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 6e-39 | 44 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 1e-34 | 42 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-35 | 42 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 2e-35 | 42 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 7e-34 | 42 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 7e-34 | 42 |
