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Name : MDS_4614 (MDS_4614) Accession : YP_004382396.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 5048647 - 5050431 bp Length : 1785 bp Strand : + Note : - DNA sequence : ATGTCCGCCTTCACCGCTACCGCCCCTGACCGTGTACTGGATCTCGGCGACCTGCTGCGCGAGCTGGTGGCCCAAGGCCG GGTCGAGCAGGAGGTGGCCGAGCAGTGCCTGGCGATTCGTCGCAGTTCGCTGAACAACGCCCAGCACCCTCTGGAGTTTC TCGCCGCGCAACAGGTCGACGACCTGTCTCGACCGGGCAAGAAGCTCGATCTGGAAAGCCTCACGGTCTGGCTGGCCAAC TTCGCCGGCCAACCCTACCTGCGCATCGACCCGCTGAAAATCGACGTACCGGCCATCACCCCGCTGATGTCCTACGCCTT CGCCCAGCGCCACAAGATTCTCGCCGTGGCAGTGGACAGCGAGAGCGTGACCATCGCCAGCAGCCAGCCGCTTGTGCACA GCTGGGAAGCCAACCTGGTCCACGTACTCAAGCGCCCGATCAAGCGCGTGGTGGCCAACCCCAGCGATATCCAGCGCTTC ACCACCGAGTTCTATCGTCTGGCGCGTTCGGTCAGCGGCGCCAATGCCACCGATCAAAAGGTCAGCGGTGTCGGCAACTT CGAACAATTGCTCAGCCTCGGCGCCCAGGACCAAGAGCCGGATGCCAACGACGCGCACATCGTCAACATCGTCGACTGGC TGTTCCAGTACGCCTTCCAGCAGCGCGCCAGCGATATCCACATCGAACCGCGCAGGGAACAGGGCACGGTGCGCTTTCGC ATCGACGGCGTATTGCACACCGTCTACCAGTTCCCCGCGCAGGTCACCATGGCGGTAGTCAGCCGCCTGAAGAACCTCGG CCGCATGAACATCGCCGAGAAGCGCAAACCGCAGGATGGCCGGGTCAAGACCAAGACCCCGGACGGCGGCGAGGTAGAGC TGCGTCTTTCCACGCTGCCGACAGCCTTCGGCGAGAAGATGGTGATGCGTATCTTCGACCCGGAAGTGCTGCTGAAGAGC CCGGATCAGCTGGGTTTCTCCCCCGAAGACCTGCGCCGCTGGGCGAGCATGACCAGTCAGCCCAATGGCATCATCCTGGT CACCGGCCCCACCGGCTCAGGCAAGACCACCACGCTCTACACCACACTCAAGCAACTGGCGACGCCGGAAGTGAACGTGT GCACCATCGAAGACCCCATCGAGATGATCGAAGGCGCCTTCAACCAGATGCAGGTGCAGCACAATATCGACCTGAATTTC GCCAGCGGCGTGCGTGCACTGATGCGTCAGGACCCGGACATCATCATGGTCGGCGAGATACGTGATCTGGAAACAGCGGA AATGGCCATCCAGGCTGCGCTGACTGGCCACCTGGTGCTCTCCACCCTGCACACCAACGACGCCCCCAGCGCCATCACCC GCCTGCTCGAACTGGGCGTGCCGCATTACCTGCTCAAGGCCACCATTCTTGGCGTCATGGCCCAGCGCCTGGTGCGCACC CTGTGCCCGCACTGCAAGGCGCCGGTACAACTGGACGAAGATACCTGGAACGGCCTGACGCGCCCCTGGAGCTCACCGCT GCCGACTCAGGCGCACCACGCAGTCGGTTGCCTGGAATGCCGCGAAACCGGCTATCGTGGCCGGGCCGGCGTCTACGAGA TCATGCTCATCAACGACGCGATCAAGCCACTGATCAGCGCCGACACGGACCTTACACTGCTACGCCGGGCCGCATTCAAG GACGGTATGCGCAGCCTGCGCCTGTCCGGTGCGCAGAAGGTTGCCGCGGGGCTGACCACTATCGAAGAAGTGCTGCGCGT CACTCCACAGAGCGAACAGCGCTGA Protein sequence : MSAFTATAPDRVLDLGDLLRELVAQGRVEQEVAEQCLAIRRSSLNNAQHPLEFLAAQQVDDLSRPGKKLDLESLTVWLAN FAGQPYLRIDPLKIDVPAITPLMSYAFAQRHKILAVAVDSESVTIASSQPLVHSWEANLVHVLKRPIKRVVANPSDIQRF TTEFYRLARSVSGANATDQKVSGVGNFEQLLSLGAQDQEPDANDAHIVNIVDWLFQYAFQQRASDIHIEPRREQGTVRFR IDGVLHTVYQFPAQVTMAVVSRLKNLGRMNIAEKRKPQDGRVKTKTPDGGEVELRLSTLPTAFGEKMVMRIFDPEVLLKS PDQLGFSPEDLRRWASMTSQPNGIILVTGPTGSGKTTTLYTTLKQLATPEVNVCTIEDPIEMIEGAFNQMQVQHNIDLNF ASGVRALMRQDPDIIMVGEIRDLETAEMAIQAALTGHLVLSTLHTNDAPSAITRLLELGVPHYLLKATILGVMAQRLVRT LCPHCKAPVQLDEDTWNGLTRPWSSPLPTQAHHAVGCLECRETGYRGRAGVYEIMLINDAIKPLISADTDLTLLRRAAFK DGMRSLRLSGAQKVAAGLTTIEEVLRVTPQSEQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-65 | 41 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-65 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MDS_4614 | YP_004382396.1 | type II secretion system protein E | VFG0182 | Protein | 8e-73 | 45 |
| MDS_4614 | YP_004382396.1 | type II secretion system protein E | VFG1880 | Protein | 7e-67 | 42 |
| MDS_4614 | YP_004382396.1 | type II secretion system protein E | VFG2048 | Protein | 2e-67 | 41 |
