Gene Information

Name : MDS_3613 (MDS_3613)
Accession : YP_004381396.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3974529 - 3975308 bp
Length : 780 bp
Strand : -
Note : -

DNA sequence : 
GTGAGTCTCAAGGCTGCAAATATCTCGGTGGCCTACGGTCGCCGACAGGTGCTTCACGGCTTGTCGTTGCCCGAGCTGCA
ACCCGGCGGTCTCGTCGCGCTGGTCGGCCCCAACGGCGCCGGCAAATCCACCTTGCTGCGGGCGCTGGCCGGGCTGGAGC
GCATGCAAGGCGAGCTGACCCTCGGCGGCCAGGATCTGACGCGCATCAGCAGTGGCGAGCGTGCCCGCACCCTGGCCTAC
ATGCCGCAACAACTGCCACCGGGCATCGCCCTCGGTGTGCTGGAGAGCGTGTTGGCGGCGCTGCGCGTGAGCGAGGGGGG
CGAGGTGCTGGCGCGTGCCTTCGACGCCCTCGCGCGCATCGGCATCGAGGATCTGGCCGCGCATTCGCTCGACGGCCTGT
CTGGCGGGCAGCGGCAACTGGTCTCGCTGGCGCAACTGATCGCCCGGCGTCCGCAGGTGCTGTTGCTCGACGAACCGACC
AGTGCGCTCGATCTGCATTACCAGTTGCGGGTGATGGATTGCGTGCGCGACCTGGTGCGTGAGCACCGCCTGCTGGCGGT
GGCCGTGCTGCACGACATCAACCTGGCGGCCAGTTGCGCCGATCAACTGGTGGTGATGCGCGCCGGGCGTATCCACGTCA
GTGGTACGCCCGACGAAGTGCTCACGCCACAACTGCTCGCCGAGGTCTACGGCGTCGAGGCGCGCGTCGAGCGCTGCTCG
CGCGGGCGTTTGCAGGTGCTGGTGGATCGGGCGCTGCCAGCCGCTCAAAGACGCGCCTGA

Protein sequence : 
MSLKAANISVAYGRRQVLHGLSLPELQPGGLVALVGPNGAGKSTLLRALAGLERMQGELTLGGQDLTRISSGERARTLAY
MPQQLPPGIALGVLESVLAALRVSEGGEVLARAFDALARIGIEDLAAHSLDGLSGGQRQLVSLAQLIARRPQVLLLDEPT
SALDLHYQLRVMDCVRDLVREHRLLAVAVLHDINLAASCADQLVVMRAGRIHVSGTPDEVLTPQLLAEVYGVEARVERCS
RGRLQVLVDRALPAAQRRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67370.1 ferric-enterobactin-transport protein Not tested PAI II CFT073 Protein 2e-50 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-27 42
irp6C NP_938506.1 ATP-binding protein Irp6C Not tested Not named Protein 7e-36 42
irp6C YP_005124377.1 ATP-binding protein Irp6C Virulence Not named Protein 5e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_3613 YP_004381396.1 ABC transporter BAC0164 Protein 7e-28 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_3613 YP_004381396.1 ABC transporter VFG1042 Protein 7e-28 42