Gene Information

Name : MDS_3571 (MDS_3571)
Accession : YP_004381354.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3934043 - 3934699 bp
Length : 657 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATTCTTCTCGTCGAAGACGACCAGGCCCTGGGCGAAGGCATTCGCACCGCGCTGAAACCCGAAGGCTATACCGT
GGACTGGCTGCAGGACGGCGCCAGCGCGCTGCATGCGCTGAGCCACGAGAGTTTCGAACTGGCCATTCTCGATCTGGGCC
TGCCGCGCATGGATGGCCTGCAGGTGCTCAAGCACCTGCAGGCCGCGGCCAACCCGGTGCCGGTGCTGGTGCTGACCGCG
CGCGATGCCACCAGTGACCGCATCGCCGGCCTCGATGCCGGTGCCGACGACTATCTGATCAAACCCTTCGACGTCGCCGA
ACTCAAGGCGCGCCTGCGCGCCCTGCTGCGACGCAGCTTCCAGCGTCCGCAACCAGCCCTGGAATACCGCGGCATCCGCC
TCGACCCGGCGAGCCAGGTGGTCGAGTACCAGGGCCAGACCATCAACCTGCCGCGCAAGGAATTCCTCTTGCTGCATGAG
CTGCTGATCCAGCCTGGTCGCGTACTGACTCGCGACAAGCTGCAACAGGCCCTCTATGGCTGGGACGAGGAAGTGGAAAG
CAACGCCCTGGAAGTGCACGTGCACCACCTGCGCAAGAAATTCTTTCCGGAGCTGATCCGCACCGTGCGCGGCGTCGGTT
ATCTGGTGGACAAATGA

Protein sequence : 
MRILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRMDGLQVLKHLQAAANPVPVLVLTA
RDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRRSFQRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHE
LLIQPGRVLTRDKLQQALYGWDEEVESNALEVHVHHLRKKFFPELIRTVRGVGYLVDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-34 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_3571 YP_004381354.1 DNA-binding response regulator BAC0487 Protein 1e-31 44
MDS_3571 YP_004381354.1 DNA-binding response regulator BAC0288 Protein 5e-26 42
MDS_3571 YP_004381354.1 DNA-binding response regulator BAC0308 Protein 6e-27 41
MDS_3571 YP_004381354.1 DNA-binding response regulator BAC0197 Protein 7e-30 41
MDS_3571 YP_004381354.1 DNA-binding response regulator BAC0638 Protein 7e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_3571 YP_004381354.1 DNA-binding response regulator VFG1390 Protein 1e-34 45
MDS_3571 YP_004381354.1 DNA-binding response regulator VFG0473 Protein 3e-34 44
MDS_3571 YP_004381354.1 DNA-binding response regulator VFG0596 Protein 3e-30 41