Gene Information

Name : MDS_3352 (MDS_3352)
Accession : YP_004381135.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 3706613 - 3707578 bp
Length : 966 bp
Strand : -
Note : -

DNA sequence : 
ATGGATGACGGCAAGCCCAAGCTGCTGGATCAATTGCGCCAGCAGATTCGAGTCAGAAACTATTCCATCCGTACTGAAGC
TGTCTATGCCGAGTGGGCAAAACGCTACATACGTTTTCATCACTATCGGCATCCAGCTGAGATGGGGGCGGCAGAGATCG
AGGCTTTTCTGACCCATCTTGCGGTTAAGCGCGATGTGTCCGCCTCGACACAGAACCAGGCTCTAGCCGCTCTGCTATTT
CTCTACAAGGAGGTGCTCAAACTGGATTTACCCTGGTTGCAGGGTGTGGTACGGGCGAAGAAGCCCAAGCATCTGCCGGT
GGTGCTTACCCGTATTGAGGTCGATGCCCTGTTAGGTCAATTGCAGGGGGATAGCTGGATCGTTGCGAACCTGCTCTATG
GCGCGGGCTTGCGTTTGCTCGAGGCGCTGCGGTTGAGGGTCAAGGATGTCGACTTCACCCGGCGAGAAATCATCGTGCGT
GATGGTAAGGGCCAGAAAGATCGGGTAACCATGCTACCAATGCGTGTTGTCGAGCCGTTACGGCAGCATTTGAACAAGGT
GCGGCATGTGCATCAGGGGGATCTGGCTGATGGGTTTGGCGAAGCCAATCTGCCGTTCGCACTGGCGCGCAAATATCCGA
ATGCGGCGAAGGAGTGGGGATGGCAGTTCGTTTTCCCGTCGGTCAACCGCTCCCAGGATCCACGCGGGCACGGCATTTAC
CGCCATCACTTGCATGAGAAGACCATCCAGAGGGCGGTGCGCGAGGCGGCGCAGCGCGCTGGCCTGATCAAGCACGCGAC
GCCCCATTCGTTACGTCATTCCTTCGCGACGCATCTACTGGAGGCAGGCCAGGACATTCGTACGGTGCAGGAGTTACTCG
GCCACTCCGACGTGAAGACCACCATGATCTACACCCATGTGCTCAATCGAGGTGGTCTCGCGGTATTGAGCCCTCTGGAT
CGCTGA

Protein sequence : 
MDDGKPKLLDQLRQQIRVRNYSIRTEAVYAEWAKRYIRFHHYRHPAEMGAAEIEAFLTHLAVKRDVSASTQNQALAALLF
LYKEVLKLDLPWLQGVVRAKKPKHLPVVLTRIEVDALLGQLQGDSWIVANLLYGAGLRLLEALRLRVKDVDFTRREIIVR
DGKGQKDRVTMLPMRVVEPLRQHLNKVRHVHQGDLADGFGEANLPFALARKYPNAAKEWGWQFVFPSVNRSQDPRGHGIY
RHHLHEKTIQRAVREAAQRAGLIKHATPHSLRHSFATHLLEAGQDIRTVQELLGHSDVKTTMIYTHVLNRGGLAVLSPLD
R

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 8e-71 56
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 1e-70 56
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 1e-70 56
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 8e-71 56
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 1e-70 56
intI YP_001844881.1 integrase Not tested AbaR20 Protein 1e-70 56
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 8e-71 56
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 8e-71 56
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 1e-70 56
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 8e-71 56
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 1e-70 56
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 8e-71 56
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 1e-70 56
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 8e-71 56
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 8e-71 56
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 8e-71 56
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 2e-51 55
int1 YP_005160012.1 integrase Not tested Not named Protein 8e-57 55
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 4e-70 55
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 4e-70 55
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 4e-70 55
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 4e-70 55
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 4e-70 55
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 4e-70 55
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 4e-70 55
intI1 AAK02045.1 integrase Not tested SGI1 Protein 4e-70 55
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 4e-70 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_3352 YP_004381135.1 integron integrase VFG1028 Protein 3e-70 55