|
Name : MDS_2996 (MDS_2996) Accession : YP_004380779.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Unknown Product : methyl-accepting chemotaxis sensory transducer Function : - COG functional category : N : Cell motility COG ID : COG0840 EC number : - Position : 3307411 - 3308976 bp Length : 1566 bp Strand : + Note : - DNA sequence : ATGCGTAACAACCAGCCGGTCACTCAGCGTGAGCGTACCTTTCCTGCACAACAACGCCTGATATCCACTACCGACCTCAA GGGCCAGATCACCTACTGCAACGACGCCTTCGTCGACATCAGTGGTTTCAGCCGCGAAGAGCTGCTGCGCGCGCCGCACA ACATCGTGCGCCACCCGGACGTACCGTCGGCCGTCTTCGACCACATGTGGACGACCCTGAAGAAGGGCCGCCCATGGATG GGTATCGTCAAGAACCGCAGCAAGAATGGCGACCACTACTGGGTCAACGCCTACGTCACCCCGATGACCGAGAACAACCA GGTCGTCGGTTACGAATCCGTCCGCGTCAAACCGACAGCCGAGCAAGTGCGCCGCGCCGAAGCCCTGTATGCACGCGTCA ATGCCGGCAAGTCGGCCGTCCCTGCCAGCAATCAGTGGTTGCCCGTAGTCCAGGCGTGGATGCCATTCATCATGGTCAGC CAGATCGGCTTCCTGATCGGCCACTGGATCGGCAGTAACTGGGGCTTCATCCTCGCCGCCCTGCTCTCCGTGCCGCTGGG CCTGGCCGGCATCGCCTGGCAGACCCGAGGTATCAAACGCCTGTTGCGCATCGCCGAGCAAACCACCTCCGACCCATTGA TCGCGCAGATGTACACCGACAGCCGCGGCGCCGAAGCGCGCCTGGAAATGGCCATGCTCAGCCAGGATGCTCGACTGAAA ACCTGTCTCACCCGCCTGCAGGACACCGCCGAACAACTCACCCAGCAGGCGCGTGAAGCCGACAAGCTGGCGCACAACAG TTCCGATGGTCTCGAACGCCAGCGCCAGGAGACCGAGCAAGTCGCCACTGCCGTCAACGAAATGGCTGCCACCACCCTGG AAGTGGCCAGCAACGTTGCCCGTACGGCCATCGCCACTCAGGAAGCCAACCGCCTGACCGGCGAAGGCCGCACCATCGCA GCGGAAACGCGCGAAGCCATCCAGCGTTTGTCGCAATCGGTGGGCGATACCGGTGAAACCGTGACCCGCCTGGCCCAGGA CAGCAACGAAATTGGCGGCGTGGTCGACGTGATCAAGGGTATCGCCGACCAGACCAACCTGCTCGCCCTCAACGCCGCCA TCGAAGCCGCGCGCGCTGGCGAAATGGGCCGCGGCTTCGCCGTGGTGGCCGACGAGGTTCGCTCGCTGGCGCAACGTACC GCCGAATCCACCGAGCAGATCCATGGCCTGATCGCCAAGCTGCAACGCACCGCCGAAGAGGCCGTACTGACCATGGAGAT CGGCCGCAAGCAGGCCGACGAAGGTGTCGAGCGCGTGCTGCGGGCCGATCAGGCGCTGTCCGGCATCAGCGACTCGGTCG CCAATATCGCCGACATGGCCAACCAGATCGCTGCTGCTGCGGAAGAGCAAAGCGCCGTCGCTGACGAGATCAACCAGAAC ATCACCACCATCGCGCAATTGGCCGACCAGACCGCTGGCGAAGCGCAAAGCACCGCCAAACTCAGCGAAGCCCTGACCAA CACCGCACAAGGCCAATACGCTCTGGTTGAACGCTTCAACCGCTGA Protein sequence : MRNNQPVTQRERTFPAQQRLISTTDLKGQITYCNDAFVDISGFSREELLRAPHNIVRHPDVPSAVFDHMWTTLKKGRPWM GIVKNRSKNGDHYWVNAYVTPMTENNQVVGYESVRVKPTAEQVRRAEALYARVNAGKSAVPASNQWLPVVQAWMPFIMVS QIGFLIGHWIGSNWGFILAALLSVPLGLAGIAWQTRGIKRLLRIAEQTTSDPLIAQMYTDSRGAEARLEMAMLSQDARLK TCLTRLQDTAEQLTQQAREADKLAHNSSDGLERQRQETEQVATAVNEMAATTLEVASNVARTAIATQEANRLTGEGRTIA AETREAIQRLSQSVGDTGETVTRLAQDSNEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRSLAQRT AESTEQIHGLIAKLQRTAEEAVLTMEIGRKQADEGVERVLRADQALSGISDSVANIADMANQIAAAAEEQSAVADEINQN ITTIAQLADQTAGEAQSTAKLSEALTNTAQGQYALVERFNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0512 | NP_230163.1 | methyl-accepting chemotaxis protein | Not tested | VSP-2 | Protein | 2e-68 | 42 |
