Gene Information

Name : MDS_2706 (MDS_2706)
Accession : YP_004380489.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2967956 - 2968780 bp
Length : 825 bp
Strand : +
Note : -

DNA sequence : 
ATGACCCTGCTTTCCTCCCTGCTCGGCGACACTCGCCAGCCAAATGTACGCCTGGAAGCCCGCGACCTGAGCATGGGCTA
CGCCCAGACGACCATCATCGACGACTTGAACCTGATCATTCCCAGCGGCCAGGTCACGGCCATCGTAGGCCCCAATGGTT
GTGGCAAGTCCACCCTGCTCGCCGGCCTGGCGCGCCTGCACAAGCCCTGCGCCGGCCAGGTACTGCTCGATGGCAAAGTC
ATCGGCAGCCTGCCCTCGCGGGACGTGGCGCGCAGGCTTGCCCTGCTGCCCCAGGATGCCAGTGCGCCGGACGGGCTGAC
GGTCAGCGAACTGATTCGTTTCGGCCGTCAGCCGCACCAGAGCCTGCTGCACCAGTGGAGCGAAGAAGATCAGGCCATCG
TCGAGGCGGCCCTGGTCGCCGCCGACCTGGTGGATCTGGCCGACCGCCCGCTGGAGTCGATGTCCGGCGGTCAGCGCCAG
CGTGCCTGGATCGCCATGGCCATCGCCCAGGCCACGCCCCTGCTGCTGCTCGACGAGCCCACCTCGGCGCTGGATCTGGG
CCATCAGATCGAAGTGTTCGAACTGATCCGCCAACTGGCCGCCGCCGGCAAGACCGTGGTCATGGTGGTACACGACCTCT
CCAGCGCCTGTCGGTACGCCGATCACCTGATCGCCATGCACCAAGGGCACATCGTCGCCAGCGGCAGTCCCCAAGACATC
GTCACCCCGGAGCTGGTCGAGCACCTGTATGGCGTGCGCTGCACGCTGCTACGAGATCCGCTCAGCAGCACACCTGTGAT
CGCCGGCGTGAGCAAGCTGACCTAG

Protein sequence : 
MTLLSSLLGDTRQPNVRLEARDLSMGYAQTTIIDDLNLIIPSGQVTAIVGPNGCGKSTLLAGLARLHKPCAGQVLLDGKV
IGSLPSRDVARRLALLPQDASAPDGLTVSELIRFGRQPHQSLLHQWSEEDQAIVEAALVAADLVDLADRPLESMSGGQRQ
RAWIAMAIAQATPLLLLDEPTSALDLGHQIEVFELIRQLAAAGKTVVMVVHDLSSACRYADHLIAMHQGHIVASGSPQDI
VTPELVEHLYGVRCTLLRDPLSSTPVIAGVSKLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-54 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-49 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-50 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-50 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-50 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-50 44
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 4e-47 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 4e-47 42
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-47 41
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 3e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_2706 YP_004380489.1 ABC transporter BAC0164 Protein 8e-50 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_2706 YP_004380489.1 ABC transporter VFG0925 Protein 1e-61 49
MDS_2706 YP_004380489.1 ABC transporter VFG1042 Protein 7e-50 45