Gene Information

Name : MDS_2676 (MDS_2676)
Accession : YP_004380459.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 2930409 - 2931686 bp
Length : 1278 bp
Strand : -
Note : -

DNA sequence : 
ATGACTGTCGCGGTATTTCTTTCCTCCCTGCTGGGGTTCATGGCATTCGGCATGCCCATTGCGTTCGCCCTGATCCTCAC
GGCGGCCGTGCTCATGTGGTATCTGGATTTCTGGGACGTGCAGCTGTTGGCGCAGAACCTGCTCGCCGGTGCCGACAGTT
TCCCGCTGCTGGCGGTGCCTTTCTTCATCCTGGCTGGTGAGCTGATGAACGCCGGCGGCATCTCCCGGCGCATCATCGCC
ATGGCCCAGGCGTACTTCGGCCACCTGCGTGGCGGCCTGGGCTATGTTGCCATCGCTGCCGCCGTGCTGCTGGCCAGCAT
GTCCGGCTCGGCCCTGGCCGATACCGCGGCGCTCGCCACCTTGTTGTTGCCGATGATGCGTCAGCGTGGCTATCCGGTGC
ACTCCTCGGCGGGGCTGGTGGCCGCTGGCGGCATCATCGCGCCGATCATCCCGCCGTCGATGCCCTTCGTGATCTACGGC
GTGGTCACCAACACCTCCATCAGCCAGCTGTTCATGGCCGGTCTGGTGCCGGGACTGATCATGGGCGTAGGCCTGATCAT
CGCTTGGACCCTGATCGCTCGCGGCTTCACCGAGCCGACGCCGGCCAAGGCCAGCGCCGCCGAGCGGCGCCGGGTGCTGA
TCGATGGTGCGGCGGCGCTGATGCTGCCGGTGATCATCGTCGGCGGCCTGCGTTTCGGCATTTTTACCCCCACCGAGGCG
GCTGTGGTCGCAGCGGTCTATGCCCTGGCCGTTTCCACCTTGCTCTATCGCGAGCTGAGCTGGAACGACCTGATGGAAAC
CCTGACCCGCGCCAGTCGCACCACGGCGTCGGTGATGTTCCTCTGCGCGGCCGCTACCGTATCGGCCTACATGATCACCC
TGGCGCAGTTACCGGACGAGATCGGCGCCATGCTCGGGCCGCTGGCCGAGCACCCAAGATTGCTGGTACTGGCGATCATG
TTGCTGATGATCGCGGTAGGCATGGTGCTCGACCTGACCCCGACCATCCTGATTCTGGCACCGGTACTGGCGCCCATCGC
GATCAAGGCCGGGGTCGATCCGGTGTACTTCGGCGTGATGTTCGTACTGATCGGCTCCATCGGCCTGATCACCCCGCCAG
TCGGCACGGTACTCAACGTCGTCGGCGGCATCGGCAAGTTGCGCATGGAGGTGCTGGTGCGCGGTGTCATGCCGTTCTTC
CTGATCTATATGGCCATCGTCGTGCTGCTGGTGGCGTTCCCGGCCATCGTCACCGTGCCGCTGGCCTGGTTGCGCTGA

Protein sequence : 
MTVAVFLSSLLGFMAFGMPIAFALILTAAVLMWYLDFWDVQLLAQNLLAGADSFPLLAVPFFILAGELMNAGGISRRIIA
MAQAYFGHLRGGLGYVAIAAAVLLASMSGSALADTAALATLLLPMMRQRGYPVHSSAGLVAAGGIIAPIIPPSMPFVIYG
VVTNTSISQLFMAGLVPGLIMGVGLIIAWTLIARGFTEPTPAKASAAERRRVLIDGAAALMLPVIIVGGLRFGIFTPTEA
AVVAAVYALAVSTLLYRELSWNDLMETLTRASRTTASVMFLCAAATVSAYMITLAQLPDEIGAMLGPLAEHPRLLVLAIM
LLMIAVGMVLDLTPTILILAPVLAPIAIKAGVDPVYFGVMFVLIGSIGLITPPVGTVLNVVGGIGKLRMEVLVRGVMPFF
LIYMAIVVLLVAFPAIVTVPLAWLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 4e-39 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 4e-39 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 3e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_2676 YP_004380459.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-39 41