Gene Information

Name : MDS_2668 (MDS_2668)
Accession : YP_004380451.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 2921278 - 2921961 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGACTTCGAGCATTCTCGCTGCGCGGAACCTTAGCAAAGTGGTCAGCAGCGCGGAAGGCGAGCTGACTATCCTCCATGA
TCTCGACCTCGAACTGACCAAGGGTGACAGCCTGGCCATCGTCGGCAGCTCCGGCTCCGGCAAATCCACCCTGCTCGGTT
TGCTCGCCGGCCTCGACCTGCCCAGCGCCGGCGCCGTGCTGCTGGCCGGCAACAACCTCAGCGAACTCGATGAAGACCAG
CGTGCGCGTCTGCGTACAGAACATGTCGGCTTCGTCTTCCAGTCGTTCCAGTTGCTCGACAGCCTCAATGCGCTGGAGAA
CGTGATGTTGCCGCTGGAGCTGGAAGGTCATGCCGATGCTCGTCAGCGTGCGCGCGCATTGCTCGAACGCGTCGGCCTCG
GCCAGCGCCTGACGCACTACCCACGCCAACTCTCCGGTGGCGAGCAACAGCGCGTGGCCATCGCCCGCGCCTTCGCCGCC
GAGCCGGACGTGCTGTTCGCCGACGAACCCACCGGCAACCTCGACAGCCATACCGGCGAGCGCATCAGTGACCTGCTGTT
TCAGCTCAACCAGGAGCGTGGCACCACCCTGGTGCTGGTCACCCATGACGAGCGCCTGGCGCACCGCTGCCAGCGTCTGA
TCCGCCTGGAAGCCGGGCACCTGATCGACCACGTGGAGCCCTGA

Protein sequence : 
MTSSILAARNLSKVVSSAEGELTILHDLDLELTKGDSLAIVGSSGSGKSTLLGLLAGLDLPSAGAVLLAGNNLSELDEDQ
RARLRTEHVGFVFQSFQLLDSLNALENVMLPLELEGHADARQRARALLERVGLGQRLTHYPRQLSGGEQQRVAIARAFAA
EPDVLFADEPTGNLDSHTGERISDLLFQLNQERGTTLVLVTHDERLAHRCQRLIRLEAGHLIDHVEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-25 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-25 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-25 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_2668 YP_004380451.1 ABC transporter NC_008702.1.4606598. Protein 5e-28 47
MDS_2668 YP_004380451.1 ABC transporter NC_012469.1.7686878. Protein 6e-30 43
MDS_2668 YP_004380451.1 ABC transporter NC_012469.1.7685735. Protein 1e-26 41