Gene Information

Name : MDS_2338 (MDS_2338)
Accession : YP_004380121.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : thiol peroxidase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG2077
EC number : -
Position : 2553522 - 2554022 bp
Length : 501 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGCAAGTCACTCTCAAAGGCAACCCGGTGCAGGTCGACGGTCAGCTGCCGCAGGTTGGTCAACAGGCGCCGGCTTT
CAGCCTGGTCGCTGGCGACCTGAGCGACGTTACCCTGGCCAGCCTGGCCGGCAAGCGCAAGGTGCTGAACATCTTCCCGA
GCGTCGATACTCCGACCTGCGCGACCTCCGTGCGCAAGTTCAACGCCGAAGCCAGCCAGTTGAACAACACCGTGGTGTTG
TGCATTTCCGCTGACCTGCCGTTCGCCCAGGCGCGCTTCTGCGGCGCCGAAGGCCTGGAAAGCGTGGTCAACCTGTCCAC
CCTGCGTGGCGCCGAGTTCCTCAAGAACTATGGCGTGGCCATCGCCACTGGCCCGCTGACCGGCCTGGCTGCGCGTGCCG
TGGTGGTGCTGGACGAGCAGGACAAGGTGCTGCACAGCGAGCTGGTTGGCGAAATCGCCCACGAGCCGGACTATGCAGCT
GCCCTGGCAGTGCTCAAGTAA

Protein sequence : 
MAQVTLKGNPVQVDGQLPQVGQQAPAFSLVAGDLSDVTLASLAGKRKVLNIFPSVDTPTCATSVRKFNAEASQLNNTVVL
CISADLPFAQARFCGAEGLESVVNLSTLRGAEFLKNYGVAIATGPLTGLAARAVVVLDEQDKVLHSELVGEIAHEPDYAA
ALAVLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 1e-34 47
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 2e-34 47
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 4e-34 46
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 3e-34 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_2338 YP_004380121.1 thiol peroxidase VFG0087 Protein 6e-35 47