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Name : MDS_2221 (MDS_2221) Accession : YP_004380004.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 2429691 - 2431934 bp Length : 2244 bp Strand : + Note : - DNA sequence : ATGTATAAAGATCTCAAGTTTCCCGTCCTAATCGTGCACCGCGATATCAAGGCCGATACCGTGGCCGGTGATCGCGTGCG CGCCATCGCGCAGGAGCTCACTCAGGACGGATTCAGCATCCTGCCCACGGCGAACGCCGCCGAGGGGCGCATCGTCGCCT CCACCCATCACGGTCTGGCCTGCATTCTGGTGGCCGCCGAGGGAGCGGGGGAGAACAGCCGCCTGCTGCAGGACATGGTC GAGCTGATCCGTGTGGCCCGAGTGAGGGCGCCACAATTGCCGATCTTCGCCCTGGGCGAGCAGGTCACCATCGAGAACGC GCCTGCCGAGGCCATGGCCGATCTCAACCACCTGCGCGGCATCCTCTATCTCTACGAAGACACCGTGTCCTTCCTGGCCC GGCAGGTGGCGCGGGCGGCGCACAATTACCTTGATGGGCTGCTGCCGCCCTTCTTCAAGGCATTGGTGCAACACACCGCG CAATCCAACTATTCCTGGCATACGCCGGGTCATGGCGGTGGCGTGGCCTATCGCAAGAGTCCGGTAGGCCAGGCTTTCCA CCAGTTCTTTGGTGAAAACACCCTGCGCTCGGACCTGTCGGTCTCTGTGCCGGAGCTGGGTTCGCTGCTTGACCACACTG GCCCGCTGGCCGAAGCTGAGGCTCGTGCCGCGCGCAACTTCGGCGCCGACCATACCTTCTTCGTGATCAACGGGACCTCG ACGGCGAATAAGATCGTCTGGCATTCCATGGTCGGTCGCGATGATCTGGTGCTGGTGGATCGCAACTGCCACAAATCGAT CCTGCATTCGATCATCATGACCGGCGCGATTCCTCTGTACCTGTGCCCCGAGCGTAACGAGCTGGGCATCATTGGGCCGA TTCCGCTTTCCGAGTTCAGCAGGGAGTCGATCCAGGCCAAGATCGAGGCCAGCCCGCTAGCTCGCGGTCGTGCACCCAAG GTCAAGCTGGCGGTGGTGACCAACTCCACCTATGACGGGCTCTGCTACAACGCCGAGATGGTCAAGCAGGCCCTTGGTGA TTCGGTCGAAGTACTGCATTTCGATGAGGCCTGGTATGCCTATGCGGCGTTCCATGAGTTCTACGCCGGCCGTTATGGCA TGGGCACCCAATGTGACGAGCAGTCGCCGCTGGTGTTCACCACCCATTCCACGCACAAGCTGCTGGCGGCGTTCAGTCAG GCGTCGATGATTCACGTGCAGGATGGTGGTCAGCGCCAACTGGACCGTGACCGCTTCAACGAAGCTTTCATGATGCACAT CTCCACTTCGCCGCAGTACGGCATCATCGCCTCGCTGGATGTGGCCTCGGCGATGATGGAGGGGCCGGCCGGGCGTTCGC TGATTCAGGAAACCTTCGACGAGGCGCTGAGCTTCCGTCGCGCCTTGGCTAACGTGCGCCGTAACCTGAGCGCCGAGGAC TGGTGGTTCAGTATCTGGCAGCCGGGCGCCGCCGACGGTGCCGACAGCCTGTCGACCGCAGACTGGGTGCTGCAGCCAGA CGCCGATTGGCATGGCTTCGGCGAAGTGGCCAGCGACTACGTGCTGCTCGATCCGATCAAGGTCACGCTGGTGATGCCGG GCCTCAATGCCGCCGGCAAGCTGGAGCAGCAGGGCATTCCTGCCGCGGTTGTCAGCAAATTCCTCTGGGAGCGTGGTCTG GTGGTGGAAAAGACCGGCCTGTACTCCTTCCTGGTGCTGTTCTCCATGGGCATTACCAAGGGCAAGTGGAGCACGCTGCT GACCGAATTGCTGGAGTTCAAACGCAGCTACGATGCCAACCTGCCGCTGATCGATGTGTTGCCCTCCATCGCCCACGCGG GCGGTGGGCGTTATCAAGGTATGGGCCTGCGTGACCTGTGTGACGCGTTGCACGGTTGCTACCGCGAAAACGCCACGGCC AAGGCGCTGAAGAGCATGTACACGGCGTTGCCTGAGCTGGCGATCAAACCGGCCGACGCCTATGACCGGCTTGTGCGCGG TGAGGTGGAGGCGGTACCCATCGATCAGTTGCAGGGGCGTATCGCTGCGGTGATGCTGGTGCCTTATCCGCCAGGCATTC CGCTGATCATGCCGGGCGAACGCTTCACGGCGGCGACGCGCTCGATTCTCGACTACCTGGCATTCGCCAGAACCTTCGAT CAGGCCTTCCCGGGTTTTGACATCGACGTGCATGGCCTGCAAACCGAGGCGGGCGAGTACAGCGTGGATTGTTTGGTTGA ATAA Protein sequence : MYKDLKFPVLIVHRDIKADTVAGDRVRAIAQELTQDGFSILPTANAAEGRIVASTHHGLACILVAAEGAGENSRLLQDMV ELIRVARVRAPQLPIFALGEQVTIENAPAEAMADLNHLRGILYLYEDTVSFLARQVARAAHNYLDGLLPPFFKALVQHTA QSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS TANKIVWHSMVGRDDLVLVDRNCHKSILHSIIMTGAIPLYLCPERNELGIIGPIPLSEFSRESIQAKIEASPLARGRAPK VKLAVVTNSTYDGLCYNAEMVKQALGDSVEVLHFDEAWYAYAAFHEFYAGRYGMGTQCDEQSPLVFTTHSTHKLLAAFSQ ASMIHVQDGGQRQLDRDRFNEAFMMHISTSPQYGIIASLDVASAMMEGPAGRSLIQETFDEALSFRRALANVRRNLSAED WWFSIWQPGAADGADSLSTADWVLQPDADWHGFGEVASDYVLLDPIKVTLVMPGLNAAGKLEQQGIPAAVVSKFLWERGL VVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRSYDANLPLIDVLPSIAHAGGGRYQGMGLRDLCDALHGCYRENATA KALKSMYTALPELAIKPADAYDRLVRGEVEAVPIDQLQGRIAAVMLVPYPPGIPLIMPGERFTAATRSILDYLAFARTFD QAFPGFDIDVHGLQTEAGEYSVDCLVE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 3e-132 | 44 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 2e-127 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MDS_2221 | YP_004380004.1 | lysine decarboxylase | VFG1670 | Protein | 2e-132 | 44 |
