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Name : MDS_2210 (MDS_2210) Accession : YP_004379993.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Unknown Product : ABC transporter Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 2415931 - 2417544 bp Length : 1614 bp Strand : - Note : - DNA sequence : ATGAGCCAGAACGAAACCCTGCTACAAGTTCGCGACCTGGCCGTCGAGTTCGTCACGGGCGACAATTGCCAGCGCGTAGT CGACGGCGTCAGCTTCGACATCCGCAAAGGCGAGACACTGGCCCTGGTCGGCGAAAGCGGCTCAGGCAAATCGGTCACCG CGCACTCGATCCTGCGCCTGCTGCCCTACCCGCTCGCACGTCATCCGCATGGCAGCATCGAGTACGCTGGCGAAGACCTG CTCAAGCTCGGCGAAGGCCGTCTGCGCGGCATCCGTGGCAACCGCATCGCCATGGTCTTCCAGGAGCCGATGACCTCGCT CAACCCGCTGCATACCATCGAGAAGCAGATCAACGAAGTGCTCGCCCTGCACAAGGGCCTGCGTGGCAAGGCGGCCAGCG CTCGCACTCTAGAGTTGCTGGAGCTGGTCGGCATTCCGGAGCCGAAGAAGCGCCTGAAGGCCTACCCACACGAACTTTCC GGCGGCCAACGGCAGCGGGTGATGATCGCCATGGCCCTGGCCAACGAGCCACAGCTGTTGATCGCCGACGAGCCGACCAC CGCGCTGGATGTCACCGTACAGCTGAAAATCCTCGAACTGCTCAAGGATCTACAGGCGCGTCTGGGCATGTCACTGCTGC TGATCAGCCATGATCTCAACCTGGTTCGCAGAATTGCCCATCGCGTATGTGTCATGCAGCGCGGTCGCATCGTCGAACAG GCGTCGTGTGAACAATTGTTCCAGGCGCCGCAGCATCCCTATACCCAGGAACTGCTCGGCGCCGAGCCCAGTGGCGAACC TGCGGCCAACCCCGCAGGCCAGACATTGCTGGAAGTGGACGACCTGCGCGTGTGGTTCCCGATCAAGAAGGGCCTGCTGC GCCGGACGGTGGATCATGTCAAAGCGGTGGACGGCATCAACTTCAGCCTGCCTCAGGGCCAGACCCTGGGCATCGTCGGC GAAAGTGGTTCCGGCAAGTCCACCCTGGGCATGGCCATTCTGCGACTGCTCGCCAGCCGCGGTGATATCCGCTTCCAGGG CCAGCAGCTGCAGGGCCTGAGCCAGCAGGAAGTACGCCCGCTGCGCAGGCAGATGCAGGTGGTGTTTCAGGACCCCTTCG GCAGCCTGAGCCCGCGCATGTCGGTGAGCCAGATCGTCGGTGAAGGTCTGCGCATTCACCGCATGGGCAACGAGGCGGAG CAGGAACAGGCGATCATCGACGCGCTTTTGGAGGTAGGGCTGGATCCGCAGACGCGGCATCGCTACCCCCACGAGTTTTC TGGCGGGCAACGGCAGCGGATTGCCATTGCCCGGGCACTGGTGTTGAAACCGGCGCTGATTCTGCTGGACGAGCCCACCT CGGCGCTCGACCGCACGGTTCAGCGTCAGGTGGTGGAGTTGTTGCGCGGCTTGCAGGCCAAGTACAACCTGACCTATCTG TTTATCAGCCATGACCTGGCGGTAGTCAGAGCGCTGAGCCACCAATTGATGGTGGTCAAGCAGGGTCAGGTGGTCGAACA GGGGTCTGCCGAGTCGATCTTCAGCGCACCGCAACACCCTTATACGCAGCAGTTGCTGGAAGCCGCTTTTCTGGCCCCGG CAACGGCTCACTGA Protein sequence : MSQNETLLQVRDLAVEFVTGDNCQRVVDGVSFDIRKGETLALVGESGSGKSVTAHSILRLLPYPLARHPHGSIEYAGEDL LKLGEGRLRGIRGNRIAMVFQEPMTSLNPLHTIEKQINEVLALHKGLRGKAASARTLELLELVGIPEPKKRLKAYPHELS GGQRQRVMIAMALANEPQLLIADEPTTALDVTVQLKILELLKDLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGRIVEQ ASCEQLFQAPQHPYTQELLGAEPSGEPAANPAGQTLLEVDDLRVWFPIKKGLLRRTVDHVKAVDGINFSLPQGQTLGIVG ESGSGKSTLGMAILRLLASRGDIRFQGQQLQGLSQQEVRPLRRQMQVVFQDPFGSLSPRMSVSQIVGEGLRIHRMGNEAE QEQAIIDALLEVGLDPQTRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRGLQAKYNLTYL FISHDLAVVRALSHQLMVVKQGQVVEQGSAESIFSAPQHPYTQQLLEAAFLAPATAH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-81 | 43 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-81 | 43 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 6e-81 | 43 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-81 | 43 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-98 | 42 |
