Gene Information

Name : MDS_1979 (MDS_1979)
Accession : YP_004379762.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : nucleotide sugar epimerase/dehydratase WbpM
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 2179233 - 2180672 bp
Length : 1440 bp
Strand : +
Note : -

DNA sequence : 
ATGCAGCCGGTGGCGTTCGTCGATGATGACGACAATATCGCTACCCGAATCATCGCCGGTCTGCAGGTCTACAAGCCTAA
ACATATCCAGCAGATGGTAGAGGAGACCGGGGCTCAGGAGATTTTGCTGGCGGTGCCTTCGCTGTCACGGGCGCGGCGCC
GTGAAATTCTTGAATGCCTCGAAGGTTTTCCGTTGCATGTCCGTTCTGTGCCGGGCTTCATGGATCTTGCTAGCGGGCGG
GTGAAGGTCGACGACCTGCAGGAGGTCGATATTGCCGACTTGCTGGGGCGAGACCCAGTACCGCCAAACCAGGCATTGCT
GGACCGCTGCATCAAAGGTCAGGTGGTAATGGTCACCGGTGCGGGCGGCTCTATCGGGTCCGAGTTGTGTAGGCAGATTC
TTGCAAGTGCTCCAAGGGTGCTGGTGCTGTTCGATCACTCGGAATATAACCTCTACAGCATTCATACCGAGTTGGAGCAG
CGCATTCAGCGCGAGTATCTGCCTGTGCAGCTGATTCCCATTTTGGGGTCCGTACGTAATGCAGCCCGGCTGCTGGATGT
CATGCAGACTTGGCATGTTAATACTGTGTACCACGCCGCGGCCTACAAACATGTGCCCATGGTTGAGCACAACATTGCCG
AGGGCGTACTTAACAATGTGGTGGGGACATTAAACGCTGCTCAGTCTGCCATCCAGGCAGGTGTTGAGCATTTCGTGTTG
ATCTCTACTGACAAGGCGGTTCGCCCCACTAACGTGATGGGTAGTAGCAAGCGCCTTGCCGAGATGATTCTACAGGCGTT
GAGTGATGAGTCGGCCCCCGTTCTATTTGGTGAGGATGGTGTTCATCGCGTCAATAAAACGCGTTTCAATATGGTGCGCT
TCGGTAACGTGCTGGGATCGTCTGGCTCGGTAATTCCGAGATTTCACGAGCAGATTCGGCGCGGTGGGCCGCTTACCGTC
ACCCACCCCAACATTACTCGCTACTTCATGACTATCCCGGAAGCAGCGCAATTGGTGATTCAGGCTGGATCGTTAGGCCA
GGGCGGCGATGTGTTCGTTCTAGATATGGGGCCGCCAGTCAAGATCCTCGATTTGGCCGAGAAGATGATCCATTTGAGTG
GCCTGAGTGTGCGTTCTGAGCGCAATCCACATGGTGATATCTCAATAGAGTTCACCGGGTTGCGGCCAGGCGAAAAGTTG
TATGAGGAACTGTTGATCGGTAATGACGTCAGTCAGACGCAGCACCCCATGATCATGCGAGCCAATGAAGAAATGCTCTC
TTGGGATGTCTACAAGCGTGTCTTGAGGGAGCTGCTCGGGGCGTTGGAAAGTGATGATTATGACCGAGTGCGACAGTTGC
TTCGCGAGACGGTCAGTGGCTATCGCCCGGAGGGGGACATTGTCGACTGGATTCATATGCGGCAACGTTCAGATAGCTGA

Protein sequence : 
MQPVAFVDDDDNIATRIIAGLQVYKPKHIQQMVEETGAQEILLAVPSLSRARRREILECLEGFPLHVRSVPGFMDLASGR
VKVDDLQEVDIADLLGRDPVPPNQALLDRCIKGQVVMVTGAGGSIGSELCRQILASAPRVLVLFDHSEYNLYSIHTELEQ
RIQREYLPVQLIPILGSVRNAARLLDVMQTWHVNTVYHAAAYKHVPMVEHNIAEGVLNNVVGTLNAAQSAIQAGVEHFVL
ISTDKAVRPTNVMGSSKRLAEMILQALSDESAPVLFGEDGVHRVNKTRFNMVRFGNVLGSSGSVIPRFHEQIRRGGPLTV
THPNITRYFMTIPEAAQLVIQAGSLGQGGDVFVLDMGPPVKILDLAEKMIHLSGLSVRSERNPHGDISIEFTGLRPGEKL
YEELLIGNDVSQTQHPMIMRANEEMLSWDVYKRVLRELLGALESDDYDRVRQLLRETVSGYRPEGDIVDWIHMRQRSDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 1e-76 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1979 YP_004379762.1 nucleotide sugar epimerase/dehydratase WbpM VFG0029 Protein 1e-108 54