Gene Information

Name : MDS_1808 (MDS_1808)
Accession : YP_004379591.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1988313 - 1989080 bp
Length : 768 bp
Strand : -
Note : -

DNA sequence : 
ATGTTCGAATTGCAAAGCGTCAGTTTCAGCATTCCTGAACGCACCCTGGTGCATCCCCTGGACCTGCGCATCGATGCCGG
CCGTATGGTCGGCCTGATCGGCCACAACGGCTCCGGCAAGTCCACTCTGATCAAATTGCTCGCCCGCCAGCAGTCGCCCA
GCGGTGGCCAGATCCTGCTCGACGGCAAACCGTTGCCGGCGTGGGGTCAGCGCGATTTCGCCCGTCAGGTAGCCTATCTG
CCGCAGCAGTTGCCCCAGACCGAGGGTCTTACCGTACGCGAGCTGGTGGGCTTTGGCCGCTATCCCTGGCATGGCGCCCT
TGGCCGTCTGGGCAGTGAAGACCGCGCGCACATCGAGCGCGCCTTGGACCTGACCGACACTGGCATGTTTGCCGATCGTC
TGGTCGATCACCTGTCCGGTGGCGAGCGCCAGCGTGTCTGGCTGGCCATGCTGCTGGCACAGAACACCCGCTACCTGCTG
CTCGACGAACCCACCTCTGCGCTGGATATCGCCCACCAGGTGGAAGTCCTGTCGCGTGTCAGCGATCTCAGCCGTGAACT
GGGCCTGGGCGTACTGGTGGTGCTGCATGACATCAATATGGCCGCGCGCTATTGCGATCATCTACTAGCCCTGCACAGCG
GTCGTCTACTGGCACAAGGCGGCCCTGCCGAGCTGATGCACGGCGAGACTCTGGAGCGCATCTACGGCGTGCCGATGGGA
GTGATGGCCAATCCAGCGGACGGATCACCAATCAGTTATCTGCAATGA

Protein sequence : 
MFELQSVSFSIPERTLVHPLDLRIDAGRMVGLIGHNGSGKSTLIKLLARQQSPSGGQILLDGKPLPAWGQRDFARQVAYL
PQQLPQTEGLTVRELVGFGRYPWHGALGRLGSEDRAHIERALDLTDTGMFADRLVDHLSGGERQRVWLAMLLAQNTRYLL
LDEPTSALDIAHQVEVLSRVSDLSRELGLGVLVVLHDINMAARYCDHLLALHSGRLLAQGGPAELMHGETLERIYGVPMG
VMANPADGSPISYLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-45 44
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 8e-43 41
irp6C YP_005124377.1 ATP-binding protein Irp6C Virulence Not named Protein 2e-25 41
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-38 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-45 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-45 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-45 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-45 41
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 8e-35 41
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-35 41
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-35 41
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1808 YP_004379591.1 ABC transporter BAC0164 Protein 5e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1808 YP_004379591.1 ABC transporter VFG0925 Protein 7e-43 43
MDS_1808 YP_004379591.1 ABC transporter VFG1042 Protein 4e-43 41