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Name : MDS_1733 (MDS_1733) Accession : YP_004379516.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 1880862 - 1882079 bp Length : 1218 bp Strand : + Note : - DNA sequence : ATGGCCGCCTTTGAATATATCGCCCTCGACGGACGTGGTCGCCAGCAGAAGGGCGTGCTGGAGGCCGACAGCGCGCGCCA GGTGCGCCAGCTGTTGCGTGAGCGGCAGTTGGCGCCGCTGGAGGTCAAGGCCACGCGCAGCCGCGAGCAGGGCAGTGGTC AGGCGCGCCTGGGCTTTGCCCGTGGTCTGTCGGCACGTGACCTGGCACTGGTCACCCGCCAGTTGGCAACGCTGATCCAG GCGGCGCTACCCATCGAAGAGGCGCTGCGCGCCGCTGCCGCGCAATCAACCAGTTCGCGTATCCAGGGCATGTTGCTGGC GGTACGTGCCCGTGTGCTGGAGGGTCACAGCCTGGCTGGCAGCCTCAAGGAATTTCCGGCCGCCTTCCCCGAGCTGTATC GCGCCACGGTGGCAGCCGGCGAGCACGCCGGGCACCTCGGCCTGGTGCTGGAACAGTTGGCCGACTACACCGAGCAGCAC CAGCAGTCGCGGCAGAAGGTACAGCTTGCACTGCTTTATCCAGTGATCCTGATGTGCGCCTCGTTACTGATCGTCGGCTT CCTGCTCGGTTATGTGGTGCCGGATGTGGTCAAGGTGTTCGTCGATTCCGGGCAGACCCTGCCGGCACTGACGCGCGGGC TGATCGCCCTCAGTGATTGGGTAAAGGCGTGGGGGCTGGTCGCGGTGGTGGCACTGGCGCTGGCGATCTTCGCCTTGCGC GCAGCCCTGCGTGACGAGGCATTCAAGCTACGTTGGCATCGCTTTCTGTTGCGTATACCGCTGATTGGCCGGCTGGGCCG CGCCACCGATTGCGCGCGCTTCGCCTCGACCCTGGCGATCCTCACCCGTAGCGGTGTACCACTGGTCGAGGCGCTGGCGA TTGCCGGCGAAGTGATCGGCAATCGGGTGATCCGTGGCGAGGTCGTGGTGGCGGCGCAGAAGGTGCGCGAGGGCGGTAGT CTGACCCGTTCGCTGGAGGCCTCCGGGCAGTTTCCGCCGATGATGCTGCACATGATCGCCAGCGGTGAACGCTCCGGCGA GCTGGATCAGATGTTGGCGCGCACGGCGAAGAACCAGGAAAACGACCTCAGCGCGCAGATTGCCTTGCTGGTCGGATTGT TCGAGCCGTTCATGCTGGTTTTCATGGGCGCAGTGGTGCTGGTGATCGTGCTGGCCATCCTGTTGCCGATTCTTTCTTTG AACCAAATGGTGGGATAG Protein sequence : MAAFEYIALDGRGRQQKGVLEADSARQVRQLLRERQLAPLEVKATRSREQGSGQARLGFARGLSARDLALVTRQLATLIQ AALPIEEALRAAAAQSTSSRIQGMLLAVRARVLEGHSLAGSLKEFPAAFPELYRATVAAGEHAGHLGLVLEQLADYTEQH QQSRQKVQLALLYPVILMCASLLIVGFLLGYVVPDVVKVFVDSGQTLPALTRGLIALSDWVKAWGLVAVVALALAIFALR AALRDEAFKLRWHRFLLRIPLIGRLGRATDCARFASTLAILTRSGVPLVEALAIAGEVIGNRVIRGEVVVAAQKVREGGS LTRSLEASGQFPPMMLHMIASGERSGELDQMLARTAKNQENDLSAQIALLVGLFEPFMLVFMGAVVLVIVLAILLPILSL NQMVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 1e-52 | 46 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-52 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MDS_1733 | YP_004379516.1 | general secretion pathway protein F | VFG0181 | Protein | 5e-122 | 84 |
| MDS_1733 | YP_004379516.1 | general secretion pathway protein F | VFG2049 | Protein | 1e-51 | 45 |
| MDS_1733 | YP_004379516.1 | general secretion pathway protein F | VFG1870 | Protein | 4e-55 | 42 |
