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Name : MDS_1732 (MDS_1732) Accession : YP_004379515.1 Strain : Pseudomonas mendocina NK-01 Genome accession: NC_015410 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1879265 - 1880752 bp Length : 1488 bp Strand : + Note : - DNA sequence : ATGAACGCTTCGTTGCCCGAAACCCCACTGCGCCGCCTGCCCTTCAGCTTCGCCAAGCGTCATGGCGTGGTGTTCGTCAT GCATGACGGGCACGCCAGCCTGGCTCATCGCGCCGATTGTGACCTGGTCGCATTGGCCGAGGCGCAGCGTTTCGCCGGGC GCAGCCTGCCGCTGCAGGTGCTCGATGCCCATGCATTCGCCCAGGCGCTGGGCGCGGCCTATCAGCACGACTCCGCTTCC ATGCAACTGGCCGAGGACATAGGCGGCAGCTTCGACCTGGCTTCGCTGGCCGATCAGGTGCCGGAAACCGAAGACCTGCT GGAGCAGGAAGACGACGCCCCGATCATCCGCCTGATCAACGCCATCCTCGGCGAAGCGATCAAGGAAAACGCCTCCGATA TCCATCTGGAAACCTTCGAGAAACGCTTGGTCGTGCGCTTTCGCGTCGACGGCATCCTGCGCGAGGTGCTCGAACCCAAG CGTGAGTTGGCCGCGTTGCTGGTGTCGCGGGTCAAGGTGATGGCACGCCTGGACATCGCCGAGAAGCGCGTGCCGCAGGA TGGGCGTATCTCGCTCAAGGTCGGCGGGCGCGAGGTGGACATTCGCGTCTCGACGCTGCCGTCGGCCAATGGCGAGCGGG TGGTGTTGCGTCTGCTCGACAAGCAGGCCGGACGGTTGTCGCTGCAGCATCTGGGCATGCGTGGTGAGGATCGCGCGCTG ATGGAGCAGACCGTGCGCAAGCCGCATGGCATCCTGCTGGTCACCGGGCCCACCGGTTCGGGTAAGACCACCACGCTGTA CGCCAGCCTGGTCAGCCTCAACGATCACACGCGCAACATTCTTACCGTCGAAGACCCCATCGAGTATCACCTCGAAGGCA TCGGCCAGACCCAGGTCAACACCAAGGTGGACATGACCTTCGCCCGTGGCCTGCGCGCTATCCTGCGCCAGGACCCGGAC GTGGTGATGGTCGGCGAGATACGCGACCGGGAAACCGCCGAGATCGCCGTACAGGCTTCGCTCACTGGTCATCTGGTGCT GTCGACGTTGCATACCAATAGCGCCATCGGCGCCATTACCCGCCTGGTGGACATGGGTGTGGAGCCCTTCCTGCTGTCGT CCTCCTTGCTCGGCGTCCTGGCCCAGCGTCTGGTGCGTGTGCTGTGTCCGGCGTGCAAGGAACCTTACCCGGCCGATGCG GCCGAATGCGCGTTGCTCGGTGTGCCGACCAGCCCGCCGCCGACCCTTTATCACGCCCGCGGCTGCGCCCATTGCCATCA GCAGGGCTATCGTGGGCGTACCGGTATCTACGAGCTGGTGGTGTTCGACGAGACCATGCGCACCCTGGTGCACAGTCGCG CTTCCGAGCAGGACATGACCCGCCACGCCCGCACCCTGGGCCCGAGCATCCGCGACGATGGTCGACGCAAGGTGTTGGAA GGGGTGACCACGGTCGAGGAAGTGCTGCGCGTGACGCGAGAGGAATGA Protein sequence : MNASLPETPLRRLPFSFAKRHGVVFVMHDGHASLAHRADCDLVALAEAQRFAGRSLPLQVLDAHAFAQALGAAYQHDSAS MQLAEDIGGSFDLASLADQVPETEDLLEQEDDAPIIRLINAILGEAIKENASDIHLETFEKRLVVRFRVDGILREVLEPK RELAALLVSRVKVMARLDIAEKRVPQDGRISLKVGGREVDIRVSTLPSANGERVVLRLLDKQAGRLSLQHLGMRGEDRAL MEQTVRKPHGILLVTGPTGSGKTTTLYASLVSLNDHTRNILTVEDPIEYHLEGIGQTQVNTKVDMTFARGLRAILRQDPD VVMVGEIRDRETAEIAVQASLTGHLVLSTLHTNSAIGAITRLVDMGVEPFLLSSSLLGVLAQRLVRVLCPACKEPYPADA AECALLGVPTSPPPTLYHARGCAHCHQQGYRGRTGIYELVVFDETMRTLVHSRASEQDMTRHARTLGPSIRDDGRRKVLE GVTTVEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-138 | 63 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-139 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MDS_1732 | YP_004379515.1 | general secretory pathway protein E | VFG0182 | Protein | 0.0 | 85 |
| MDS_1732 | YP_004379515.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-138 | 63 |
| MDS_1732 | YP_004379515.1 | general secretory pathway protein E | VFG1876 | Protein | 4e-132 | 59 |
| MDS_1732 | YP_004379515.1 | general secretory pathway protein E | VFG2426 | Protein | 1e-75 | 49 |
| MDS_1732 | YP_004379515.1 | general secretory pathway protein E | VFG0112 | Protein | 1e-79 | 43 |
