Gene Information

Name : MDS_1515 (MDS_1515)
Accession : YP_004379298.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1655351 - 1656043 bp
Length : 693 bp
Strand : +
Note : -

DNA sequence : 
ATGCTGCAGCTGGAGGTGGCGGTGCGGATTCTGCTGGTCGAAGACCATCCGCAATTGGCGGAGAGCGTGGCCCAGGCGCT
GAAAGGTGCCGGCTGGACGGTGGATGTGCTGCATGATGGCGTCGCTGCTGATCTGGCACTGTCCAGCGAGGACTACGCGC
TGGCGATTCTCGATATAGGCCTGCCACGCCTGGACGGATTTGCCGTGCTTGCGCGCCTGCGTGACCGTGGCCAGACCCTG
CCGGTACTGATGTTGACCGCGCGTGGCGAGGTCAAGGATCGCGTCCATGGCCTCAATCTCGGTGCTGATGACTACCTGGC
CAAACCTTTCGAACTCACCGAACTGGAGGCGCGGGTCAAGGCGTTGCTGCGGCGTAGCGTGCTCGGTGGTGAGCAATTGC
AGCGCTGTGGCGATCTGGTCTACGACCTGGGCGCCCGCCGTTTCAGCCTCGAGGGCGAGGCTCTTAGTCTCACGGCCCGT
GAACAGGCTGTGCTGGAGGCGATGATCGCCAGGCCGGGGCGGGTGATGAGCAAGGAACAACTGGCGGCGCAGGTATTCGG
CCTGGACGAGGATGCCAGCCCGGATGCCATCGAGATCTACATCCATCGCCTGCGCAAGAAGCTCGAGGGCAGCGCCGTGC
GCATCGTCACCTTCCGCGGTCTCGGCTACCTGCTGGAGGCGGTCGAGGCATGA

Protein sequence : 
MLQLEVAVRILLVEDHPQLAESVAQALKGAGWTVDVLHDGVAADLALSSEDYALAILDIGLPRLDGFAVLARLRDRGQTL
PVLMLTARGEVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGEQLQRCGDLVYDLGARRFSLEGEALSLTAR
EQAVLEAMIARPGRVMSKEQLAAQVFGLDEDASPDAIEIYIHRLRKKLEGSAVRIVTFRGLGYLLEAVEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-27 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1515 YP_004379298.1 two component transcriptional regulator BAC0083 Protein 3e-35 47
MDS_1515 YP_004379298.1 two component transcriptional regulator BAC0638 Protein 1e-31 43
MDS_1515 YP_004379298.1 two component transcriptional regulator BAC0487 Protein 9e-33 41
MDS_1515 YP_004379298.1 two component transcriptional regulator CP001485.1.gene721.p Protein 3e-29 41
MDS_1515 YP_004379298.1 two component transcriptional regulator BAC0197 Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1515 YP_004379298.1 two component transcriptional regulator VFG1390 Protein 6e-30 43
MDS_1515 YP_004379298.1 two component transcriptional regulator VFG1389 Protein 4e-25 43
MDS_1515 YP_004379298.1 two component transcriptional regulator VFG0596 Protein 6e-28 42
MDS_1515 YP_004379298.1 two component transcriptional regulator VFG0473 Protein 9e-37 41