Gene Information

Name : MDS_1138 (MDS_1138)
Accession : YP_004378921.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3272
EC number : -
Position : 1240907 - 1241902 bp
Length : 996 bp
Strand : -
Note : -

DNA sequence : 
TTGTACAAGAACAAGTTCATGTACAAGGTCTTTCGAGGTCAGGTTATGCAAGCGAGCAAAGCCAAACTGGGTATCAGCGC
CTGCCTGCTGGGGGCTGAAGTACGCTACAACGGCGGCCATAAACTGTCGCGCCTGTGCAGCCGCAGCCTGACCGAACACT
TCGACTTCATCCCGGTTTGCCCGGAAGTCGGCATCGGCATGTCGATCCCGCGCGAGCCGATACGCCTGGTCGGTGATCCG
CTGGCGCCGCGTGCCGTGGGCACCGCCGACCGCTCACGCGATGTCACCGATGCGCTGGCCGCTTATGGCGAGCGCATGGC
GCAGGAGCTGCAGGGCATCAGCGGCTACATCTTCATGCAGCAGTCGCCCTCCTGCGGTCTGGAACGGGTCAAGGTCTATC
AGGAAGGCGGACGCCCAAGCAAACCGGGCCGCGGCATCTTCGCCGCAGCCTTCTGCGCACGCCATCCGGACCTACCGGTG
GAAGAAGATGGCCGTCTCAACGATCCGGTACTGCGCGAAAACTTCATTACCCGCGTATACGCCCACGCCGAATGGCAGCG
CCTGCTGCAACAGGGCCTGACCCGGCGCGCGCTGATCGCCTTCCACTCGCGCTACAAGTACCTGCTGATGGCTACCGACC
CGGCGCGCTACAAGTCGCTCGGACGCCTGCTCGGCGAACTGAGCCAGCATGATCTCGGCGAGCTGGCGCCGCACTATTTC
AGCGAGCTGATGAGTGCATTGAAGAAATGCGCCACGCGCGGCACCCACAGCAACGTGCTGCAGCATCTGAGCGGCTACCT
CAAGCGCGCCCTCAGCCCTGACGAGAAGCAGGAGATGCAGCAGCTGATCGGCCAGTACCGCGACGGCATCGTGCCGCTGG
TAGTGCCGCTGACGCTGCTCAAACACCACTTCCGCCGCCATCCGGATCGCTACATCGCTGAACAGGCTTACCTGCAGCCA
CATCCCGAACCTCTTGCCCTGCGCAACGCACTGTGA

Protein sequence : 
MYKNKFMYKVFRGQVMQASKAKLGISACLLGAEVRYNGGHKLSRLCSRSLTEHFDFIPVCPEVGIGMSIPREPIRLVGDP
LAPRAVGTADRSRDVTDALAAYGERMAQELQGISGYIFMQQSPSCGLERVKVYQEGGRPSKPGRGIFAAAFCARHPDLPV
EEDGRLNDPVLRENFITRVYAHAEWQRLLQQGLTRRALIAFHSRYKYLLMATDPARYKSLGRLLGELSQHDLGELAPHYF
SELMSALKKCATRGTHSNVLQHLSGYLKRALSPDEKQEMQQLIGQYRDGIVPLVVPLTLLKHHFRRHPDRYIAEQAYLQP
HPEPLALRNAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 1e-61 43
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 8e-62 43
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 1e-61 43
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 1e-61 43
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 1e-61 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1138 YP_004378921.1 hypothetical protein VFG0490 Protein 6e-62 43