Gene Information

Name : MDS_1053 (MDS_1053)
Accession : YP_004378836.1
Strain : Pseudomonas mendocina NK-01
Genome accession: NC_015410
Putative virulence/resistance : Virulence
Product : two component response regulator PilR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1157713 - 1159053 bp
Length : 1341 bp
Strand : -
Note : -

DNA sequence : 
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGTTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCGCGCAACGTCAAAGAGGCGCGCGAGTGGCTGGCGCGCGAGCCCTTCGACTTGTGCTTGACCG
ATATGCGCCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTTCCCGTGGCGATG
ATCACCGCTTACGGCAGCCTGGATACCGCGATCAACTCGCTCAAGGCCGGGGCCTTCGACTTTCTCACCAAACCGGTGGA
CCTCGGCCGGCTGCGCGAACTGGTGGCGACCGCCCTGCGCATTCGCGCACCCGAAGGTGAGGAAACACCAGTCGATAGCC
GCCTGCTCGGCGACTCGCCACCGATGAAGTCGCTGCGTAAGCAGATCCTGAAGCTTTCGCGCAGTCAGGCACCGGTCTAC
ATCAGCGGCGAATCGGGCAGTGGCAAGGAGCTGGTTGCCCGCCTGATCCATGAGCAGGGCCCACGCATCGAACAACCGTT
CGTGCCGGTCAACTGCGGCGCGATACCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGTCACAAGAAGGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCAGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGATCTGCCG
TTGCCAATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAGGCCGTGCGCGCCGTCGGTGGCCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTTGCCGCCGAAGTCGCCGCGGGCCGCTTCCGTCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTGCCACCACTGCGTGAACGTCGCGAGGACATTGCCCTGCTGGCTGAGGTGATG
CTTGCACGCCTGGCCGATGGCACCGGCCTGGCAGCTGCCAATCTGCACCCCGATGCACTGGAAAAGCTGAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAGCTAGAGAACATGCTCGAACGCGCCTACACCCTCTGCGAAGACGATCAGATAACACCCG
GCGACCTACGCCTGGCCGACGCCAGCGGCCCTGGCAACGAAGGAGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCCTTGGAAGAAACACGCTGGAATCGCACGGCCGCGGCCCA
GCGCCTGGGCCTGACCTTCCGTTCGATGCGCTACCGCCTGAAGAAGCTGGGCATCGATTGA

Protein sequence : 
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKSLRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRIEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIALLAEVM
LARLADGTGLAAANLHPDALEKLKSYRFPGNVRELENMLERAYTLCEDDQITPGDLRLADASGPGNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-99 49
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-99 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1053 YP_004378836.1 two component response regulator PilR BAC0467 Protein 1e-72 44
MDS_1053 YP_004378836.1 two component response regulator PilR BAC0089 Protein 2e-71 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MDS_1053 YP_004378836.1 two component response regulator PilR VFG1214 Protein 0.0 90
MDS_1053 YP_004378836.1 two component response regulator PilR VFG0116 Protein 6e-55 43