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Name : G5S_0224 (G5S_0224) Accession : YP_004376942.1 Strain : Chlamydophila pecorum E58 Genome accession: NC_015408 Putative virulence/resistance : Virulence Product : type II/IV secretion system protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 233929 - 235419 bp Length : 1491 bp Strand : - Note : - DNA sequence : ATGGCCGATGATCTCCTGAATTATAAGCTTTTAGACCTTTTCCCCTATACGTTTCTAAAGAAACACTGCTGTCTTCCTCT TGAAGAAGAGGGCGATGTTCTTGTAATTGCTCATGCACCGACGACCTCCCTTGTAGCTTTAGATGAAATTCGGTTGTTAT CGAAAAAGAACGTACGCTTTCTTATAAAAGAAGAAGCTGAAATCCTACAGAGTCTGCAAAAGCTTTATAGCACAAGAGGC GGAAAAGCTTCTGATATGCTGCTAACGATGGAGCAGGAAACCTCCCCCACAATGGAAGCTCAGGAAGATCTCCTTGAAAA TACGAGTTCGGCTCCTGTTGTCCGGCTGTTAAATTTGATCTTAAAAGAAGCGATCGAAGAGCGAGCTTCAGATATTCATT TTGAGCCTTCCGAAGAGGTATTGCGTATCAGATATCGTATAGATGGAGTTCTTCATGACCGCCATTCTCCTCCGTCACAT CTACGCTCTGCACTCATCACGCGGCTTAAAGTTTTAGCTAAGTTGGATATTGCGGAGCATCGCCTTCCCCAAGATGGTAG GATAAAGCTGCAGCTTGGTGGACAGGAAGTGGATATGCGTGTCAGCACAGTGCCTGTGATTCATGGGGAAAGGGTCGTTT TGCGGATCTTAGATAAGCGAAATGTGATTTTAGATATTGCAGGGCTCTGCATGCCTGAAGCAATGGAGAGGGAATTTAAA GAAAATATTAAAGCTCCAGAAGGGATTTTGCTAGTTACGGGCCCTACGGGAAGTGGGAAAACTACGACGTTATATGGAGT GTTGCAGGAGCTCTCAGGACCGTTTACAAACATTATGACAATCGAGGATCCTCCAGAATATAAACTCGCAGGGATCGCAC AGATCGCTGTAAAGCATAAAATCGGTCTGTCGTTTTCGCGTGGGTTACGGCATTTGTTGCGTCAAGATCCGGATATTTTA ATGGTGGGAGAAATCCGAGATCAGGAAACAGCAGAGATCGCCATACAGGCAGCTCTAACGGGACATTTCGTAGTGAGTAC CTTGCATACAAATGATGCCATCTCGGCTGTATTTCGTTTGATAGATATGGGAGTGGAGCCTTATTTGCTTTCCGCAACCC TTGTTGGAGTGGTGGCACAAAGGTTGGTAAGAAAACTTTGTCCCCATTGTAAAAAAACCTGCTCCCCAGATGAGCATGAA AAGGCGTTTCTTCTTTCCCTTAAGGAAGACCCTCATCGCCAAGTATACCATGGACAGGGATGCTCGGCGTGTTTTCATTC TGGATACAAAGGCCGACAGGGAATCTACGAGTTTTTCCGTCCAGATGCGCATCTGCGCTCAGAGATTGCTCAGAGGCAAA CATATCAGGCGTTGCGAGACCATGCCTATACCAGTGGTTTTTGTCCTTTGTTAGAGCATGGTGTTGCTTTAGCCCTTTCT GGGCAAACCTCATTATCCGAGGTTTTGAGGGTAACAAGACACTACGATTAA Protein sequence : MADDLLNYKLLDLFPYTFLKKHCCLPLEEEGDVLVIAHAPTTSLVALDEIRLLSKKNVRFLIKEEAEILQSLQKLYSTRG GKASDMLLTMEQETSPTMEAQEDLLENTSSAPVVRLLNLILKEAIEERASDIHFEPSEEVLRIRYRIDGVLHDRHSPPSH LRSALITRLKVLAKLDIAEHRLPQDGRIKLQLGGQEVDMRVSTVPVIHGERVVLRILDKRNVILDIAGLCMPEAMEREFK ENIKAPEGILLVTGPTGSGKTTTLYGVLQELSGPFTNIMTIEDPPEYKLAGIAQIAVKHKIGLSFSRGLRHLLRQDPDIL MVGEIRDQETAEIAIQAALTGHFVVSTLHTNDAISAVFRLIDMGVEPYLLSATLVGVVAQRLVRKLCPHCKKTCSPDEHE KAFLLSLKEDPHRQVYHGQGCSACFHSGYKGRQGIYEFFRPDAHLRSEIAQRQTYQALRDHAYTSGFCPLLEHGVALALS GQTSLSEVLRVTRHYD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-98 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-98 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| G5S_0224 | YP_004376942.1 | type II/IV secretion system protein | VFG0182 | Protein | 1e-96 | 54 |
| G5S_0224 | YP_004376942.1 | type II/IV secretion system protein | VFG1876 | Protein | 5e-101 | 48 |
| G5S_0224 | YP_004376942.1 | type II/IV secretion system protein | VFG2426 | Protein | 5e-77 | 48 |
| G5S_0224 | YP_004376942.1 | type II/IV secretion system protein | VFG2048 | Protein | 6e-99 | 46 |
| G5S_0224 | YP_004376942.1 | type II/IV secretion system protein | VFG0233 | Protein | 3e-71 | 45 |
| G5S_0224 | YP_004376942.1 | type II/IV secretion system protein | VFG0112 | Protein | 3e-79 | 41 |
