Gene Information

Name : yrkD (CAR_c22960)
Accession : YP_004375969.1
Strain : Carnobacterium sp. 17-4
Genome accession: NC_015391
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1937
EC number : -
Position : 2410206 - 2410466 bp
Length : 261 bp
Strand : -
Note : -

DNA sequence :

ATGGAATATAATGTGAAAATTGTAAACCGGTTGAAACGTTCTGACGGACAATTGCATGGCGTATTAAAGATGATGGAAGA
TGGAAAAGAGTGCGTGGACATCGTGACACAATTGTCAGCTGTTCGTGCCAGTCTTGATCGGGCTATTAGCTTGATTGTGG
CTGAAAACTTAGTAGAATGTGTACAAGAAAACATTAAAGAGGGCGGTACTGGAGAAGAAAATATCCAACAAGCCATTAGT
CTGTTAATGAAAAGCAGATAA

Protein sequence :

MEYNVKIVNRLKRSDGQLHGVLKMMEDGKECVDIVTQLSAVRASLDRAISLIVAENLVECVQENIKEGGTGEENIQQAIS
LLMKSR

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
SERP2514	YP_190056.1	hypothetical protein	Not tested	Type-II SCCmec	Protein	3e-18	47
unnamed	BAC57484.1	hypothetical protein	Not tested	Type-IIIinv SCCmec	Protein	2e-18	47
unnamed	BAA82210.2	-	Not tested	Type-II SCCmec	Protein	2e-18	47
SACOL0048	YP_184958.1	hypothetical protein	Not tested	Type-I SCCmec	Protein	2e-17	47
SAV0048	NP_370572.1	hypothetical protein	Not tested	Type-II SCCmec	Protein	3e-18	47
SA0045	NP_373285.1	hypothetical protein	Not tested	Type-II SCCmec	Protein	3e-18	47
SAR0047	YP_039520.1	hypothetical protein	Not tested	Type-II SCCmec	Protein	3e-18	47
unnamed	BAB47614.1	hypothetical protein	Not tested	Type-III SCCmec	Protein	2e-18	47
SAPIG0063	YP_005732873.1	conserved protein YrkD	Not tested	Type-V SCCmec	Protein	2e-17	46
unnamed	BAA82170.2	-	Not tested	Type-II SCCmec	Protein	3e-19	46
unnamed	BAA86632.1	hypothetical protein	Not tested	Type-I SCCmec	Protein	1e-19	46
unnamed	BAA94324.1	hypothetical protein	Not tested	Type-I SCCmec	Protein	4e-15	44
unnamed	BAB83476.1	-	Not tested	SCC 12263	Protein	7e-15	43