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Name : clpC (CAR_c02250) Accession : YP_004373976.1 Strain : Carnobacterium sp. 17-4 Genome accession: NC_015391 Putative virulence/resistance : Virulence Product : class III stress response-like ATPase, AAA+ superfamily Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 226943 - 229435 bp Length : 2493 bp Strand : + Note : - DNA sequence : ATGGATGAATTATTTTCTGAAAAAGCAAGAATGGTTTTGATCATGGCGCAAGAAGAAGCAAAAGGATTTCGTCATCATTC TGTAGGAACTGAGCACATTCTTTTAGGGTTAATTATGGAACAAGATGGTATTGCAGGAAAAACGTTAAGACAATTTTCTG TTACTGAAATGGATATTCGTGAAGAAATTGAACACTTTACGGGTTATGGAACAATGAAGTACCTTTCTAAAAATGCGATT CTTCCTTATTCACCAAGAGCCAAACAAGCCATTACGTTTGCAACAGATGAAGCAAGACGCATGGGATCAGCGCTTGTTGG TACAGAACATTTATTGCTAGGATTATTGCGTGAAGAAGATATTTTATCTTCTAAAATTTTAAACAACTTAGACATTAATT TAAATAAAGCTCGTCAAATCGTATTGAAAAAAATCGGTTTGAGCGATGTAACGAATGGTAAAGGAAGAAAAGCTAAGCCA GCTGCTAAACAAGTTGCCGGTACACCTACTTTGGACTCACTAGCTCGTGATCTAACAGCTGTCGCAAGAGAAGGAAAGCT AGATCCAGTTGTTGGTCGTCACAAAGAAATCCAACGTATTATTCAAGTTTTAAGTCGCCGAACAAAAAATAACCCTGTTT TGGTTGGGGAACCTGGTGTCGGTAAAACAGCCATTGCAGAAGGTTTAGCACAAAAAATTATTGATGGAGAAGTTCCAGCT GCATTAGCCAATAAACGATTAATGATGCTAGATATGGGTTCATTGGTAGCTGGTACAAAATATCGTGGTGAGTTTGAAGA ACGAATGAAAAAAGTGATTGATGAGATTTATCAAGATGGCGAAGTGGTTTTATTTATAGATGAATTGCATACTTTAATTG GTGCTGGTGGAGCAGAAGGTGCAATTGATGCATCGAATATTTTGAAGCCTGCATTAGCGCGTGGCGAGTTGCAAACGATT GGAGCAACAACTTTAGATGAATACCAAAAGTATATTGAAAAGGATGCAGCTTTAGAAAGACGATTTGCACCCATTCATGT GGATGCTCCTTCAGAAGAAGAAGCTGAAGAGATATTGTTAGGATTACGTTCTCGTTATGAAGAGCATCATGGTGTTGAAA TTACAGATGAGGCAGTACATGCTGCGGTTAAGTACTCATCACGTTATATTATGTCAAGACAGTTACCAGATAAAGCCATT GATTTGATAGATGAATCAGCTTCTAAAGTAAGATTAGATGTTTCGAGTAAACCTTCGCCAGTTGCAGCTGCGGTTACAGA TTTAGAAGGTTTAATACAAGAAAAAGAAGAAGCTATTCAATTGCAAGATTTTGAAAAAGCAGCGAAAATTCGTTCAAAAG AAATGAAGCAACGCAAAAAGATCGAAAGTTTAATTCAAAAACAAGAAGGAAAAGCTGCTTCAAATTCCTTACAAGTAACG GAAAGAGATATTGCGGAAGTTGTTGCTTTATGGACAGGTATTCCAATTCAACAAATGGAACAAAAAGAATCAGACCGTTT AATGAATTTAGAAAAAGTATTGCATAAACGTGTAATTGGACAAGAGAAAGCTGTGGGTTCAGTCTCTAGGGCGATTAGAC GATCTAGAAGTGGATTGAAAGATCCAAACCGTCCTATCGGGTCATTTATGTTCTTGGGGCCTACTGGTGTAGGTAAAACA GAATTAGCTAAGGCACTTGCGGAAGCTATGTTTGGTAATGAAGAAGCTCTAGTTCGAGTAGATATGTCTGAGTTTATGGA AAAATATAGTACAAGTCGTTTAATTGGTTCACCTCCCGGATATGTTGGTTATGATGAAGGTGGTCAATTAACTGAAAAAA TTCGTCAAAAACCCTATTCAGTTATTCTATTTGATGAAGTCGAAAAAGCTCATCCAGATGTATTTAATATTTTATTACAG GTCTTGGATGATGGTCATTTAACAGATGCTAAAGGACGAAAAGTTGATTTCAAAAACACAGTAATGATTATGACATCTAA CTTAGGCGCAACAGCATTAAGAGATGAAAAAGCTGTTGGATTTGGTACAGCAAACAATAAAAAAGATCATTCAGCAATGG AAAAACGAATCATGGAAGAATTGAAGAAAACGTTCAAACCTGAGTTTATCAATAGGATTGATGATTCGATTGTTTTCCAT TCTCTGGAAAAAGAAGAGTTAACTCAAATCGTTAAATTAATGGCACACACCATTATTAAACGATTAAAAGATATGGATAT TGAAGTTAAAATCACTCAAGCGGCTATAGATGTGATTGCTAAAGCTGGTTATGATCCTGAATATGGAGCACGCCCAATTC GTCGTGCACTTCAGAAAGAAGTGGAAGATCGATTGAGTGAAGAGTTATTGAGTGGCCGAGTTAAAATCGGTGATCAGATC ACCATTGGTGCTTCAAAAGGAACTATTCGGATTACAGTAAAAGATCTTAAAAAGGTAAATGAAAAATCGTTAGCTACAAG TGAGAATGTATAA Protein sequence : MDELFSEKARMVLIMAQEEAKGFRHHSVGTEHILLGLIMEQDGIAGKTLRQFSVTEMDIREEIEHFTGYGTMKYLSKNAI LPYSPRAKQAITFATDEARRMGSALVGTEHLLLGLLREEDILSSKILNNLDINLNKARQIVLKKIGLSDVTNGKGRKAKP AAKQVAGTPTLDSLARDLTAVAREGKLDPVVGRHKEIQRIIQVLSRRTKNNPVLVGEPGVGKTAIAEGLAQKIIDGEVPA ALANKRLMMLDMGSLVAGTKYRGEFEERMKKVIDEIYQDGEVVLFIDELHTLIGAGGAEGAIDASNILKPALARGELQTI GATTLDEYQKYIEKDAALERRFAPIHVDAPSEEEAEEILLGLRSRYEEHHGVEITDEAVHAAVKYSSRYIMSRQLPDKAI DLIDESASKVRLDVSSKPSPVAAAVTDLEGLIQEKEEAIQLQDFEKAAKIRSKEMKQRKKIESLIQKQEGKAASNSLQVT ERDIAEVVALWTGIPIQQMEQKESDRLMNLEKVLHKRVIGQEKAVGSVSRAIRRSRSGLKDPNRPIGSFMFLGPTGVGKT ELAKALAEAMFGNEEALVRVDMSEFMEKYSTSRLIGSPPGYVGYDEGGQLTEKIRQKPYSVILFDEVEKAHPDVFNILLQ VLDDGHLTDAKGRKVDFKNTVMIMTSNLGATALRDEKAVGFGTANNKKDHSAMEKRIMEELKKTFKPEFINRIDDSIVFH SLEKEELTQIVKLMAHTIIKRLKDMDIEVKITQAAIDVIAKAGYDPEYGARPIRRALQKEVEDRLSEELLSGRVKIGDQI TIGASKGTIRITVKDLKKVNEKSLATSENV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 8e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004373976.1 | class III stress response-like ATPase, AAA+ superfamily | VFG0079 | Protein | 0.0 | 62 |
| clpC | YP_004373976.1 | class III stress response-like ATPase, AAA+ superfamily | VFG0080 | Protein | 2e-154 | 52 |
