Gene Information

Name : CAR_c15500 (CAR_c15500)
Accession : YP_004375225.1
Strain : Carnobacterium sp. 17-4
Genome accession: NC_015391
Putative virulence/resistance : Virulence
Product : putative polysaccharide biosynthesis protein, chain length determination
Function : -
COG functional category : D : Cell cycle control, cell division, chromosome partitioning
COG ID : COG0489
EC number : -
Position : 1603102 - 1603806 bp
Length : 705 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAACAAAAAAGAAAAAAAACTTGATAATAACGAACGACCAAGTTTAGTTACACTAACAAGACCAAGTTCAGTAAT
TGCTGAACAATTTAGAACGATACGTACCAATATTCAATTTTCAATGGTAGATAAAAATCTCAAGACACTAGTTATTACGT
CAGCTGGACCTGGCGCAGGTAAATCAACAATATCAGCTAATTTAGCTGTTACTTTTGCTATGCAAGGCAAAAAAGTTTTA
ATCGTTGATGCGGATATGCGTAAACCGACAGTCCATAAAACATTTCGTTTGCCTAATCGTGATGGTTTGACAACATTATT
GACTGAAAGAGATGTTGAAATAAAAGATATCGCTCATCGCTTAGATACAGAAGGATTATTTGTTATTACAAGTGGTGTTA
TTCCACCAAATCCGTCTGAGTTATTAGCATCAAACCGAATGAATCAATTAATGTCAGAATTCGAAGAACTATTTGACTTG
ATTATTTTTGATATGCCACCTGTTATCGCAGTTACGGATGCTCAAGTGATGTCAAGTAAAACAGATGGCACCATTTTTGT
TGTTAACAAAGATGGTGCAGATAAAGAAATGGTAACAAAATCAAAAAACTTACTTGAAAAAGTAAACGCAAATGTTATTG
GTGTAGTATTAAATCGAGTAGAATTAAAAGGAGATAATTATTATTACTATTATGGAGAAGAATAA

Protein sequence : 
MFNKKEKKLDNNERPSLVTLTRPSSVIAEQFRTIRTNIQFSMVDKNLKTLVITSAGPGAGKSTISANLAVTFAMQGKKVL
IVDADMRKPTVHKTFRLPNRDGLTTLLTERDVEIKDIAHRLDTEGLFVITSGVIPPNPSELLASNRMNQLMSEFEELFDL
IIFDMPPVIAVTDAQVMSSKTDGTIFVVNKDGADKEMVTKSKNLLEKVNANVIGVVLNRVELKGDNYYYYYGEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 2e-38 44
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 8e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAR_c15500 YP_004375225.1 putative polysaccharide biosynthesis protein, chain length determination VFG1298 Protein 1e-42 42