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Name : epsC (CAR_c14270) Accession : YP_004375104.1 Strain : Carnobacterium sp. 17-4 Genome accession: NC_015391 Putative virulence/resistance : Virulence Product : putative UDP-sugar epimerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1464002 - 1465690 bp Length : 1689 bp Strand : - Note : - DNA sequence : ATGGTTGCTTTTGGGATAGCAGGTTACAGCTTTTTAGCAGGTTATTCAGGGATCTGTGCTACTCTCTATCGCTACACAAG CATCAAGGATATGCTGATCATTTTTATTTCTATCACAGTATCTTTCGGAGCAACGACAACGCTTGCTGTTTTATTACTGG ATGAAATGAGTTTTCGGTATATTTTATTGATCTATCTCGTTTCGTTATTACTAGTTAGTGGGGGGCATATTGTTTTTAGA ATTATCCACGATTACAAAACAAGTACTTCTCCAGAGAAACAAACAGCTGAAAAAATCCGAACGTTAGTAGTCGGTGCAGG TGATGGTGGAAATCTATTTATCAAGAATATTCAAAAGAATTCAACGGATATAAAAGTAGTCGGTGTTGTTGATGATGATG AAGCTAAACATGGTATGCGGTTATACAGCATCCCTATTTTAGGGAATATTTCTGATATCCCAGTATTCACAAAAAAATTA AATGTTGAACAAATTACAATTGCAATTCCTTCATTAAAACCCAAACAACTTGAAAAGATTTTAGAGATTTGTAATGATAT CAATCTGCCGGTCAATTTAATGCCATCTATAGAAGATGTGATAAATGGGAAACTAATGGTCAGCCGCTTCAGAGAAATCG ATGTGGTCGATTTATTGGGAAGAGACGAAGTAACGTTAGATACAAAACAAATCTCAGAAGATCTATTTGGCAAAACTATT TTAGTCAGCGGTGCTGGCGGATCTATTGGCTCAGAAATTTGTCGAATCATATCTACTTTTGCTCCTAAAAAAATTATTTT ATTAGGACATGGTGAAAACTCGATTTATCAAATCCACCGTGAATTAAATAAAAATTTTGTTGGTAAAATTGATATTACAC CGGTTATAGCAGATGTCCAAAATCGACAAAGAATGTTTGATATTATGGAAATGTATAAACCTGATATTGTTTATCATGCA GCTGCCCATAAACATGTTCCAATGATGGAATCAAATACTTTTGAGGCTGTAAGAAATAATGTTTATGGTACAAAAAACAT AGCTGAAGCTGCTAAAGCGGCTAATGTAGGAACCTTTATCATGATCTCTACTGACAAAGCTGTGAACCCGCCGAATGTTA TGGGAGCAACAAAACGTATTGCTGAAATGATCGTGACTAGTTTAAATGAAGAGGGGAAAACAAATTTTGCAGCTGTCCGC TTTGGAAACGTATTGGGCAGTCGTGGCAGTGTGGTTCCACTATTCAAAGAACAAATAAAAGCAGGTGGCCCTGTGACGGT AACAGACTTTAGGATGACACGTTATTTTATGACAATCCCAGAAGCCAGTCGTTTAGTGATCCAAGCAGGAACTTTAGCAA AGGGTGGAGAAATCTTTGTCTTAGATATGGGAAAACCGGTTAAAATTGTTGATTTAGCTAAGAAAGTAATCAAATTAAGT GGATTTAGTGATGATGAAATTTCAGTAGTTGAAACTGGAATTCGCCCAGGAGAGAAGCTGTATGAAGAGTTATTGATTGC TAGTGAAAATACTGGTGAGAAAGTATTTGATAAAATATTTGTTGGAAAAGCGGTAAGGCGTTCACTAGAAGAAGTAATGT CGTTTTTAAAAACATTAGATGGATGTAGTGATGCTTCATTAAAAGAACAATTAATTTACTTTGCTAAAACACATCAAGCA GCAGCATAA Protein sequence : MVAFGIAGYSFLAGYSGICATLYRYTSIKDMLIIFISITVSFGATTTLAVLLLDEMSFRYILLIYLVSLLLVSGGHIVFR IIHDYKTSTSPEKQTAEKIRTLVVGAGDGGNLFIKNIQKNSTDIKVVGVVDDDEAKHGMRLYSIPILGNISDIPVFTKKL NVEQITIAIPSLKPKQLEKILEICNDINLPVNLMPSIEDVINGKLMVSRFREIDVVDLLGRDEVTLDTKQISEDLFGKTI LVSGAGGSIGSEICRIISTFAPKKIILLGHGENSIYQIHRELNKNFVGKIDITPVIADVQNRQRMFDIMEMYKPDIVYHA AAHKHVPMMESNTFEAVRNNVYGTKNIAEAAKAANVGTFIMISTDKAVNPPNVMGATKRIAEMIVTSLNEEGKTNFAAVR FGNVLGSRGSVVPLFKEQIKAGGPVTVTDFRMTRYFMTIPEASRLVIQAGTLAKGGEIFVLDMGKPVKIVDLAKKVIKLS GFSDDEISVVETGIRPGEKLYEELLIASENTGEKVFDKIFVGKAVRRSLEEVMSFLKTLDGCSDASLKEQLIYFAKTHQA AA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-117 | 60 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-116 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| epsC | YP_004375104.1 | putative UDP-sugar epimerase | VFG1300 | Protein | 5e-116 | 60 |
| epsC | YP_004375104.1 | putative UDP-sugar epimerase | VFG0029 | Protein | 9e-78 | 41 |
